Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01256 ATGGCAGGGCCTGATTACCAAGCCAATCAAGACAAGAATGATTTTCTGCAGATTTTGGAAGCTCAAGGGGTTGAGTTCCTTCTCTCTGGTGAAGAAAAGGTATCCCCAATATTATGTGGAGGGAAGATGATTTGCCTATTATTTTCAGCAAAATGGTGTAGACCTTGCAGGACTTTCACTCCACAGTTGGTTCAACTCTACAACACTTTGCAAAAGAGAGGTGAAAAGCTAGAGATTATCTTCATCTCTTTGGACCATGATAAGAATGAATTTGAGCAATACTTTAAGACTATGCCATGGCTCGCTGTGCCGTTTGATGCTGAGCTGCAGAAACAATTGTGTGGCGAGTACTGTGTCGATTGCATTCCGTTGTTCGTTCCACTTTGCAGAGATCAGATCTCGAAAGAAGATGATTTGATTGGCTTTATTGAAGACTATGGTGCTGAAGTATTTCCTTTTACAAGGAAAAGGATGCAGGAACTTAAGGCAATGGATTGTGCCAAACGTGTGGAAGGAAAACTTGAAGAACTCTTGGGGAACAGAGGATATAACTATGTTATTTCCGGACATGGAGCCAAGACACCAATATCTCAGCTAATTGGCAAGACAATAGGCCTTTATTTTGGTGCATATTGGAGCCCTCCAAGTCGTTCCTTCACAGCAAAACTTTCTAAAGTATACAAGGAAATCATGGAAAAAACACAGATCAATCACTCCTTAGAAGTAATCTTCGTCTCCACGGACCGAAACCTCGACGAATTCAAACTCAACATAATGGACATGCCATGGCTCGCAATCCCCTATGAGGACAAGACCCGGCAAGACCTCTACAGGATCTTCGACGTGAAGGCAATCCCGACACTAGTCTTGATCGGGGCGGATGGAAAGACGTCGAGTGAGAATGGAAGAGGCTTGGTTTCCTTGTATGGAGCAGAGGCATTCCCATTTACAGAAGAAAGAATAGAAGAGTTGGAAGCAGCAGTGAAAAAGGAAGCAGAGGAATTGCCTTCAAATGTGGAGGATATGAAGCATGAGCATGTGCTTAAATTGGAGTTGGCAAAAGCTTATGTGTGTGATTTTTGCAAAAGCCAAGGAAGGTTTTGGGCATTTTCTTGTGGTATTTGTGATTATGATCTTCATCCAAGTTGTGTTCAGCTGAAAAATGGGTTGTTCTTCTCCTTCTCTCTCTCTCTCTCTGCTGCCCCTTTCTCTATCTCTCTAGTTGTTTGCAGGGAAATGTGGAGTCAGAAGCAATCAATTGGTGGTAAGGAAAGGAAAGAGCTGGCCACTGGCAATCAATTAGTGGGAATCGCCATTGACAAGGATAAAGGAAGTCAAGTTGCTCTCAAATGGGCCACTGAGAATCTCCTTGTAAAGGGCCAAACTGCCATTCTCATCCACGTTAAACTCCGACCTTCCTCCTATCCTGGCTCTTCTCTCGCTACCCCTAAGGTGATGTCGGCATCTGATGCTGGCAGTGGCAATGGCAATGTTATGGTAAGCAAGGATATGGATCCGAGCACAAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACGCGTAAAGATATATTTTGCAAAGACATCGTCCTTGAAGATTTAGACGTTGCAAAAGCGTTGATCGAATATGTCACTCAGGCTGGAATTGAGAATTTGGTTGTTGGTGCCACGGCTAAAAGTGGCTTCTTGAGAAGATTCAAGACGACAGATATTCCAGGCAGTGTTGTCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGGAAAATCCAAACAATGCGATCAGCCTCACGTCCTGCTCCCGCTTCGTCTCCTCTACGAAGTTTATTGCTGAGCCAAGCTGGTATCAAATCACATTCAGCAGAGTCACCAGTTCCTCAGATTCAAAGACCTGAAAAGCCTCCCCTTGAAGCAGCACGTAGATCTCAGGACAACATCGAGTTCAGGTCGCCATTCACTAGGAAAGGCTACAATGGAAAAATGCCAGGGGAAGTCAGTCAGCCAGATACTGATATTTCTTTCGTTAGCTCGGGAAGGCCGAGTGTTGATAGATTATTCCCTACATTGTATGACAACCTGGATACAGGAAGGGTTCCCCCGCGGCTGTCCAGTGGCAACGATGCTGATATATACAATAGCTTCGAGTCACAGCAGTTCGGACGCAAATCATTGGATGTAAACTATCCACCTGAATTTTTATCGGTCTTCTCAGAAGGTGACAGATTGTCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAAATGAGGAGGCTGAAGCTGGAACTAAAGCAAACCATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTAACAGCTAAACAAAAGGCAATAGAGCTTCAACGATGGAAATCTGAGGAAGAGCGTAGAATAGAGGAGGCAAGACTTGCAGAGGAAGCTGCATTAGCGATGGTTGAGCAGGAAAAGGCGAAGTCTCGAGCTGCTATTGAGGCTGCTGAGGCAGCTAAAAGGATCGCTGAGTTGGAAGCACAGAAGAGAATTAATGCGGAAAAGAAAGCATTCAAGGAAGCAGAAGAGAAGAAGAAGGCATTAGATGCTTTGGCAAACAATGATGTCAGGTATCGGAAGTACTCAATTGACGAGATTGAAACTGCTACTGAGTTTTTTTCAGAATCTTTAAAGATTGGAGAGGGAGGTTATGGCCCTGTTTATAAAGGTTATTTGGACCACACACCAGTTGCAATTAAGGTCTTACGTCCGGATGCGGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTTGAAGTACTAAGCTGCATACGACATCCTAACATGGTTCTTCTCCTTGGAGCATGCCCCGAATATGGCTGCTTGGTCTATGAGTTCATGGCACATGGTAGCTTGGATGACTGCCTCTTTCGCCGAAGAGAAAACTCAAAACCTCTTTCTTGGCAACGTAGATTCAAAATTGCAGCTGAAATTGGCACTGCCTTGTTGTTCCTCCACCAGACTAAGCCTGAGCCTCTTGTGCACCGTGATTTGAAACCGGCCAACATCTTGCTCGATCGTAACTATGTTAGCAAGATTAGCGACGTTGGTTTGGCCAGGCTTGTTCCCCCATCTGTAGCCGACAGTGTGACACAATATAGAATGACTTCAACTGCTGGCACATTCTGTTATATCGATCCCGAGTATCAACAAACGGGCATGCTTGGTGTAAAGTCCGACATATATTCATTGGGAATCATGTTTTTGCAGTTGATTACAGCAAGAGCACCCATGGGATTGACTCACCATGTGGGAAGAGCTATTGAGAAAGGGACTTTGTCGGAAATTCTTGATCCATCTGTTACCGATTGGCCAGCTGAAGAAACGTTATGCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAAGACCGACCTGATCTCGGTAAGGTTGTTCTCCCAGAGCTCATCAGATTTCAATCGCTAGCCGAAGCCAGCATGTACACACTGGTGAAGGACGGTGACGGCGAATGTTTTTCCTCACAATCTAGCGATAGACATGGAGTCTTATCACGCTCAGCGCCGTAG 3570 44.96 MAGPDYQANQDKNDFLQILEAQGVEFLLSGEEKVSPILCGGKMICLLFSAKWCRPCRTFTPQLVQLYNTLQKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPFDAELQKQLCGEYCVDCIPLFVPLCRDQISKEDDLIGFIEDYGAEVFPFTRKRMQELKAMDCAKRVEGKLEELLGNRGYNYVISGHGAKTPISQLIGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMEKTQINHSLEVIFVSTDRNLDEFKLNIMDMPWLAIPYEDKTRQDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVSLYGAEAFPFTEERIEELEAAVKKEAEELPSNVEDMKHEHVLKLELAKAYVCDFCKSQGRFWAFSCGICDYDLHPSCVQLKNGLFFSFSLSLSAAPFSISLVVCREMWSQKQSIGGKERKELATGNQLVGIAIDKDKGSQVALKWATENLLVKGQTAILIHVKLRPSSYPGSSLATPKVMSASDAGSGNGNVMVSKDMDPSTRDLFLPFRCFCTRKDIFCKDIVLEDLDVAKALIEYVTQAGIENLVVGATAKSGFLRRFKTTDIPGSVVKGAPDFCNVYVISRGKIQTMRSASRPAPASSPLRSLLLSQAGIKSHSAESPVPQIQRPEKPPLEAARRSQDNIEFRSPFTRKGYNGKMPGEVSQPDTDISFVSSGRPSVDRLFPTLYDNLDTGRVPPRLSSGNDADIYNSFESQQFGRKSLDVNYPPEFLSVFSEGDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALAMVEQEKAKSRAAIEAAEAAKRIAELEAQKRINAEKKAFKEAEEKKKALDALANNDVRYRKYSIDEIETATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMAHGSLDDCLFRRRENSKPLSWQRRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITARAPMGLTHHVGRAIEKGTLSEILDPSVTDWPAEETLCFAELALKCAELRRKDRPDLGKVVLPELIRFQSLAEASMYTLVKDGDGECFSSQSSDRHGVLSRSAP 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25473806 25487201 + ClCG08G012580.1 Cla08g01256 278911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01256 1189 Gene3D Glutaredoxin 20 157 - -
Cla08g01256 1189 SMART serkin_6 886 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01256 1189 Gene3D Glutaredoxin 180 318 - -
Cla08g01256 1189 Coils Coil 812 867 - -
Cla08g01256 1189 SUPERFAMILY Thioredoxin-like 189 297 IPR036249 -
Cla08g01256 1189 SUPERFAMILY Cysteine-rich domain 334 387 IPR046349 -
Cla08g01256 1189 Pfam Protein kinase domain 888 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01256 1189 Coils Coil 745 772 - -
Cla08g01256 1189 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 426 1177 - -
Cla08g01256 1189 Gene3D HUPs 433 588 IPR014729 -
Cla08g01256 1189 PANTHER OS02G0152300 PROTEIN 426 1177 - -
Cla08g01256 1189 Coils Coil 314 334 - -
Cla08g01256 1189 CDD STK_N 434 591 - -
Cla08g01256 1189 SUPERFAMILY Thioredoxin-like 30 144 IPR036249 -
Cla08g01256 1189 Gene3D Phosphorylase Kinase; domain 1 864 958 - -
Cla08g01256 1189 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Cla08g01256 1189 CDD TryX_like_TryX_NRX 184 316 IPR045870 GO:0004791
Cla08g01256 1189 Gene3D Transferase(Phosphotransferase) domain 1 959 1162 - -
Cla08g01256 1189 SUPERFAMILY Protein kinase-like (PK-like) 870 1146 IPR011009 -
Cla08g01256 1189 ProSiteProfiles Protein kinase domain profile. 886 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01256 1189 Pfam Thioredoxin-like 201 296 IPR012336 -
Cla08g01256 1189 Pfam Thioredoxin-like 41 126 IPR012336 -
Cla08g01256 1189 ProSiteProfiles Thioredoxin domain profile. 1 175 IPR013766 -
Cla08g01256 1189 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 437 583 - -
Cla08g01256 1189 MobiDBLite consensus disorder prediction 621 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00462 Cla-Chr2:4479828 Cla08g01256 Cla-Chr8:25473806 0 dispersed
Cla05g02642 Cla-Chr5:37623867 Cla08g01256 Cla-Chr8:25473806 0 dispersed
Cla08g01004 Cla-Chr8:22789988 Cla08g01256 Cla-Chr8:25473806 0 dispersed
Cla08g01256 Cla-Chr8:25473806 Cla11g01104 Cla-Chr11:22448886 0 dispersed
Cla10g00306 Cla-Chr10:4020701 Cla08g01256 Cla-Chr8:25473806 1.54E-52 dispersed
Cla08g01256 Cla-Chr8:25473806 Cla09g00073 Cla-Chr9:688045 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80756 PF00069 Pkinase 4.90E-38 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01256 - - csv:101214468 1300.42