Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01259 ATGACGGCACCGGTGTCAGTTGATGGGAAAGTGAAGAAGAATCTTGAGAATTTGGTGTCTGCTACTAAGTCTTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTTGAGGAGATTAGGCAAAGATTGCCAACTTTAGAAGCGGCGGTTCGGCCTATCCGTGCTGATAAGGAAGCCCTTGCCGCCGTCGGTGGCCATATACATCGGGCTGTTGGCCCTGCGGCGGCGGTGCTTAAGGTTTTTGATGCTGTTCATGGTCTTGAAAAGTCTCTGTTATCGGACCCGCGGAATGATCTCCCTGGATATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTAGGAGATAACTGTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTAGAAGATAATACTGTTGCTGATGAGAAATATCTAGCGAGTTTGAAGAATTCGTTGAAAAATCTTAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTAACAGAGCATAGTGTACCCCTTCCCATGTCTTCTTCGGCGTCTCTCGTTGAACAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTAATTCAGAAATTGCAAGCCATTCTTGGGAGATTGATTACTAATAAACGACTCGAGAGATGCATATCGATTTATGTTGAAGTTCGTAGTTCTAATGTTCGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGACGTTTTCGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACTCAAGCAGGTATACTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGCGGGGCGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTCATTAAGAGGGTTATCGATGGTACAGCCGAGATTTTCTGGGAGCTTCTAGTTCAGGTGGAGCTCCAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGTGATGATTATCGGCCGATCCTGACCCAAGCCCTCGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTGTCAATGAGGTAACAAACCTTGTTAAAGCCATTGAGCAGAATCTGGAGACTTGGATCAAGGCTTATGAAGATTCTACCTTGTCAAATTTTTTCGCTATGAATAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGATAAACTAAAGGAACACGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCATCTAAGCAGGGAGGGTTTGATTATGTTTTCAGGTGGGAGAGCTACTGCTCGTGATCTCGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAACCTGGGTTATATTTGACAAAGAACTGAGGGAGAAGACATGTCAACTTATAGTTCAAACCATCGTGCCCGTTTATCGCAGTTACATGCAGAATTACGGCCCCCTGGTCGAGCAAGACGCGAGTTCCAGTAAGTATGCGAAGTACACCGTGCAGAATCTGGAGAAAATGTTGCTGTCCCTATATCAGCCAAAGCCACTCAGGTACAGTAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAATGGATCATCGTCGTTCCAACTCCATGGTTTTGTAA 2049 43.73 MTAPVSVDGKVKKNLENLVSATKSLKASLEKSRALGFALQKAGPRFEEIRQRLPTLEAAVRPIRADKEALAAVGGHIHRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEKYLASLKNSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASLVEQACIAPSPLPVTVIQKLQAILGRLITNKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGTAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLVNEVTNLVKAIEQNLETWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSTWVIFDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLYQPKPLRYSSLKVRQTSGKFSNGAMDHRRSNSMVL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25509216 25511264 + ClCG08G012620.1 Cla08g01259 278914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01259 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 14 671 - -
Cla08g01259 682 Gene3D Exocyst complex component Exo70 138 654 - -
Cla08g01259 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Cla08g01259 682 Coils Coil 12 32 - -
Cla08g01259 682 Pfam Exo70 exocyst complex subunit 290 645 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cla08g01259 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 671 IPR004140 GO:0000145|GO:0006887
Cla08g01259 682 Coils Coil 155 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01259 Cla-Chr8:25509216 Cla08g01629 Cla-Chr8:28862475 1.56E-71 dispersed
Cla08g01259 Cla-Chr8:25509216 Cla09g00140 Cla-Chr9:1434497 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01259 K07195 - csv:101207478 1278.08