Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01268 ATGGCCGGCAATCATAAGGCTATCACTCTCGAGGAGATTAAAAACGAAGCCGTTGATCTGATAGAATCGCTGACGAATGAATTCGGCCGGATTATTCTCCGTTTGTTTGCGACTTTTCTGTGCGATGATTCGATCGATGATCGTATTCGCGTTGCAGCGGAGATGAATCATCGATTCGGATGTTTGTTTGTAGTTACTCTGTTTACTGGATCAGTTTGCTTATTCTTTAATGTTTACACGACTGAAAATTTGGCGTTAAACATCAGGCCGAACGACATTTTTCACAAAGTAGTAGGGAAATCGGAATTAGAATTCCCACTGCCGCGTCTACGCCGTGATTTCTCTGGCGATATGGCGGACGCAATAGCCGGGGATGGCTTCTCCCCTCTTCATTTCTGTTTTCCATTTTATTTTCGATCCCCGCCAAGTTCTCCACGAAGATCAGGGCGGAGATTCCTTCAGGAACATATTCCAATAGAGGAAGTGTTTGAACAGTTGAAATGTACACGAGAAGGTCTGACATCAGAGGAAGGAGCCCATCGGCTTCAAGTTTTTGGTCCCAACAAACTAGAAGAGAAGAAGGAAAGCAAAATTCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCTTGGGTAATGGAAGCTGCTGCCTTAATGGCTATAGTCCTGGCAAATGGTGGTGGAAGACCACCAGACTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATTAGTTTTATTGAAGAAAACAACGCTGGTAACGCGGCTGCAGCACTCATGGCTGGTCTTGCTCCTAAAACTAAGGTTCTAAGAGATGGTCGTTGGAGTGAACAAGAGGCTGCTATTCTTGTTCCGGGAGATATCATAAGCATTAAGCTTGGAGATATAATACCAGCAGATGCCCGTCTTCTGGAGGGCGATCCTTTAAAAATTGATCAATCTGCTTTAACTGGAGAATCGCTCCCAGTCACCAAGAACCCCTCAGACGAAGTGTTTTCTGGCTCTACATGTAAACAAGGTGAAATTGAAGCAGTTGTGATTGCCACTGGTGTGCACACATTTTTTGGCAAAGCAGCTCACTTGGTAGATAGCACCAATCAAGTTGGACATTTCCAGAAAGTTCTTACTGCTATTGGTAATTTCTGCATTTGCTCGATCGCTGTTGGAATACTAATCGAGCTTATAGTTATGTACCCAATACAACGACGCAAGTATAGAGATGGAATTGACAACTTGCTAGTGCTTTTGATTGGTGGAATTCCTATTGCCATGCCAACCGTTTTGTCTGTCACCATGGCCATTGGTTCTCATAGGCTTTCTCAGCAGGGTGCCATTACGAAGAGAATGACAGCCATTGAGGAAATGGCTGGCATGGATGTCCTCTGCAGTGATAAGACGGGAACTCTGACCTTGAACAAGCTAACCGTGGATAGAAGCTTGATCGAAGTGTTTGTCAAGGGTGTCGAGAAAGAGTATGTTATTCTTCTTGCGGCTAGGGCTTCTAGAACGGAGAATCAAGATGCCATTGATGCAGCTATAGTAGGAATGCTTGCGGATCCTAAAGAGGCACGAGCAGGAATTAGAGAGGTTCATTTCCTTCCATTCAATCCTGTTGACAAAAGAACTGCCCTTACTTATATCGACTCTAATGGAATTTGGCACCGAGTAAGCAAAGGTGCTCCTGAGCAGATCCTGAATCTTTGCAACTCTAGGGAAGACGTTAGAAGAAAGGTTCATGCAGTGATTGACAAGTTTGCAGAGCGTGGACTTCGTTCATTGGGCGTTGCAAGACAGGAAGTACCTGAAAAAACAAAAGATAGCCCGGGAGGACCGTGGCAGCTTGTTGGTTTGTTGCCTCTATTTGATCCTCCTAGGCACGATAGTGCAGAAACCATAAGAAGAGCTCTAAACCTTGGAGTAAATGTGAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACCGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCTTCATCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATCGAGAAGGCAGATGGGTTTGCTGGAGTATTCCCAGAACACAAATATGAAATTGTGAAAAGGCTGCAGGAAAGGAAACATATATGTGGAATGACTGGTGATGGTGTTAATGATGCTCCTGCTTTAAAGAAGGCAGATATTGGAATTGCTGTTGCGGATGCTACTGATGCTGCTAGAGGTGCTTCGGATATTGTCCTCACAGAACCAGGATTGAGTGTCATTATTAGTGCGGTGCTAACCAGTAGGGCTATTTTTCAGAGAATGAAGAATTACACGATTTATGCCGTTTCAATTACCATTCGTATAGTGTTTGGCTTCATGTTCATTGCTTTGATTTGGAAGTTTGACTTTGCTCCCTTTATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAGCCTGATAGTTGGAAACTGAAGGAGATTTTTGGAACTGGCATTGTGCTTGGAGGATACATGGCACTAATGACAGTGTTATTCTTTTGGGCTGTGAAAGATACCAACTTTTTCTCCGAAAAATTTAATGTGAAACCCTTGAAGGATAGTCCTCAAGAATTGATGGCAGCCTTGTACCTACAAGTCAGCATAATAAGTCAGGCACTTATCTTTGTCACGAGGTCTCGCAGCTGGTCATACTTGGAACGTCCTGGACTCCTCCTAGTCGGCGCTTTCATCATTGCTCAGCTGGTGGCAACAGTGATAGCTGTTTATGCAAATTGGGGTTTTGCAAGGATCAAAGGAATGGGATGGGGTTGGGCTGGTGTTATCTGGCTGTACAGCTTGGTAACATACATCCCTCTCGACATTTTGAAATTTGGAATCCGATATGCCCACAGTGGAAAGGCTTGGGACACTCTTTTGGAGAACAAGACTGCGTTCACAACGAAAAAGGATTATGGAAAAGAAGAGAGAGAAGCACAATGGGCAGCTGCACAGAGGACTCTACATGGTCTTCAACCACCTGAAAACTCCAATCTCTTCCCTGAGAAAAGTAGTTATAGGGAGCTTTCCGAGATTGCTGAGCAAGCCAAACGCCGCGCTGAGGTTGCAAGGCTCCGTGAATTGCATACACTAAAGGGACATGTTGAATCAGTAGTAAAGCTGAAGGGATTGGACATTGATACAATCCAACAACACTACACAGTTTAA 3270 43.85 MAGNHKAITLEEIKNEAVDLIESLTNEFGRIILRLFATFLCDDSIDDRIRVAAEMNHRFGCLFVVTLFTGSVCLFFNVYTTENLALNIRPNDIFHKVVGKSELEFPLPRLRRDFSGDMADAIAGDGFSPLHFCFPFYFRSPPSSPRRSGRRFLQEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGIWHRVSKGAPEQILNLCNSREDVRRKVHAVIDKFAERGLRSLGVARQEVPEKTKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYMALMTVLFFWAVKDTNFFSEKFNVKPLKDSPQELMAALYLQVSIISQALIFVTRSRSWSYLERPGLLLVGAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25581049 25590699 - ClCG08G012700.1 Cla08g01268 278923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01268 1089 Gene3D - 232 953 - -
Cla08g01268 1089 PANTHER CALCIUM-TRANSPORTING ATPASE 155 1069 - -
Cla08g01268 1089 Gene3D - 1038 1089 - -
Cla08g01268 1089 SFLD p-type atpase 449 777 IPR044492 -
Cla08g01268 1089 SMART Cation_ATPase_N_a_2 153 225 IPR004014 -
Cla08g01268 1089 SUPERFAMILY HAD-like 463 773 IPR036412 -
Cla08g01268 1089 Gene3D - 270 354 - -
Cla08g01268 1089 PRINTS H+-transporting ATPase (proton pump) signature 898 919 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g01268 1089 PRINTS H+-transporting ATPase (proton pump) signature 726 742 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g01268 1089 PRINTS H+-transporting ATPase (proton pump) signature 698 714 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g01268 1089 PRINTS H+-transporting ATPase (proton pump) signature 757 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g01268 1089 PRINTS H+-transporting ATPase (proton pump) signature 583 601 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g01268 1089 Pfam haloacid dehalogenase-like hydrolase 463 740 - -
Cla08g01268 1089 Gene3D - 464 763 IPR023214 -
Cla08g01268 1089 Pfam E1-E2 ATPase 269 446 - -
Cla08g01268 1089 PRINTS P-type cation-transporting ATPase superfamily signature 643 653 - -
Cla08g01268 1089 PRINTS P-type cation-transporting ATPase superfamily signature 726 745 - -
Cla08g01268 1089 PRINTS P-type cation-transporting ATPase superfamily signature 467 481 - -
Cla08g01268 1089 PRINTS P-type cation-transporting ATPase superfamily signature 749 761 - -
Cla08g01268 1089 PRINTS P-type cation-transporting ATPase superfamily signature 317 331 - -
Cla08g01268 1089 PRINTS P-type cation-transporting ATPase superfamily signature 621 632 - -
Cla08g01268 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 985 IPR023298 -
Cla08g01268 1089 Pfam Cation transporter/ATPase, N-terminus 156 219 IPR004014 -
Cla08g01268 1089 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 172 944 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla08g01268 1089 SUPERFAMILY Calcium ATPase, transduction domain A 270 367 IPR008250 -
Cla08g01268 1089 PANTHER PLASMA MEMBRANE ATPASE 155 1069 - -
Cla08g01268 1089 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 701 816 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g01268 1089 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 239 486 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla08g01268 1089 SFLD C1.7: P-type atpase like 449 777 - -
Cla08g01268 1089 CDD P-type_ATPase_H 172 979 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cla08g01268 1089 ProSitePatterns E1-E2 ATPases phosphorylation site. 469 475 IPR018303 -
Cla08g01268 1089 Gene3D - 479 626 IPR023299 GO:0000166
Cla08g01268 1089 Coils Coil 1040 1060 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01418 Cla-Chr1:28677689 Cla08g01268 Cla-Chr8:25581049 0 dispersed
Cla06g01342 Cla-Chr6:26836182 Cla08g01268 Cla-Chr8:25581049 0 dispersed
Cla06g01611 Cla-Chr6:29630953 Cla08g01268 Cla-Chr8:25581049 0 dispersed
Cla07g01180 Cla-Chr7:28794418 Cla08g01268 Cla-Chr8:25581049 0 dispersed
Cla08g01268 Cla-Chr8:25581049 Cla11g01171 Cla-Chr11:24491447 0 dispersed
Cla05g01798 Cla-Chr5:29892197 Cla08g01268 Cla-Chr8:25581049 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01268 K01535 - csv:101213505 1783.84