Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01279 ATGGTACTACCGCTTTCCCTTGAGAGTTCCTTTCTTATCCAATTCCTAACATTTATTTACATGGTTGCCCTTTATGAACTTATCCTCTTCCAACCAAGGAAAGATAGGAGATCAATCTTGTGTGAGTCACCAAATGACCTTTGGAGCATTCACTTAAACTGCATTGATCTCAACCCGAGTAACCTTATGAGGACAACTCCCAAATCCCCGCCTCTACCCAAGGCCTCATTAACAAAAAAAGGGTACTTCGTAATAGCCGACAACATCATTCAGCAAATTGATGACCTTCAAATCTCTCCGTCTCTTGCACTCTCTCCATCTCTGCTCTCTCAAGCTCTCTTTGATTTCGTTGTCGTCTCTCACTCTCGGTTGTTCTTCAAGTGTGAGGTTGGTGAAGTGAAAAGATGTATAACGACCGGAAAGGTTGCTGAAAGCTCTAGAGGATTCGAAGAAGATCAGGGCACTGCTGGAGTTTCAAAGAAACCGAATAAAGACATTCTCGAACACGATCGCAAGCGTCAGATTGAACTCAAACTTGTCATACTTGAGGACAAGCTCACTGACCAAGGTTATACCATGGATGAAATTTCCGAGAAGTTAAAGGAGGCTCGTGAGACTTTGGAAGCTGCTTCAGAGGAAAAAGATGGAGCTTCTGCCATCGTACTTGCAGATAAGAGGGTATCAGATACACAGACTCACCAAATTGCTGCAAGAAAGGAGGAGCAGATGAAAACATTTAGAGCTGCTCTTGGGTTGGGCTCATTGGACGATACTGAACAGGCTAAAGAAGAGATTTCTGATCCATCAAGAAATAGAAGAGAGGGTCAGAATGCTGATATTAAGCGTCATGAGAAGTCTGAACATTCTTTCTTGGATAGAGAATTGAACTGGAAAAAGCATGGCACTGAAGATCAGTATGATGATAAGGATGACAAAAAAAGGGTTTCAAAAGAGTTGAAAGGTCATCAGAAGGATAGAAAAAGAAGGTCCAAGGATGATTCTTCTGACACCGATTCTGGTGAGCGTAAGGGAACCAAGAAGAACTTGAGAGATAGTATAAAGAATGATTCTGAAAGTGACCTTGACAGTGATGTTGGCAACAAATATGTCGCGGCAAGGAAGTCTATAAAAAATAGAAGGCACGATAGTGATGATTCTTCTGATCCTGATTCTGGTGGTGAGCGCAACGGAACCAAGAAGCACATGAGAGATAAACGGAGAGATGATCCTGAAATTGACTCAGACAGCGATTTTGACCAGAAATATATCACCTCAAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGATGATTCTTCTCATACTGATTCTGGTGGAGAGCACAAGAAAACCAAGAAGAATATGAGAAATTATCAAAGAGATCATGGAAGTCATCCTGACAGTGACGTTGATAAGAAATACACCTCAAAGAAGCAGGCAAAAAACACAAGGCATGATAGTGATGATTCTGATTCGTTTACAGATGGTGATAAGTTTGGGATGGGCAGCCACAAGAAAGGATCTGGTAGACATAAAAGTCAAAAGGTGAAAAAGCAAAGAAGCTGGAAACAGGAGTCTACTGATGAATCCAATTCTGACAGTGGGATTGATGATAAACGCAGAAAACTGAAGCACAAAAACCAGCATGGTAAAAGATATGGGGTAGAAAGTGACAGCTCTGACCATGACAGTTCTGATTCTGATGTAGGTCGCAAGAAGAGTACGCATAGGCATGACAGCAAGCGTACAGGAAAGAGGAGGGTAGATAGTGAATCCGATTCTGAAAAGTCGAGAAAGCATCCTAAGAAAGATGTTGGCAGACGCGGACATGATATTGATGATGAAAAAAGTGGTGATAACAGCTCTAGCAGTGATGAAATAGTGAAGAGGCGCAGAGGTAGGAGGCACAATACTGATGATGAATCTGAAGAAGGTGAATATTTTGGTAGAAGTGATAGGGTAGACACAAAGGGAAAGAAAATAGCTGCTAAAAGGCAACATGATGACAGTGATAATTCTGATGATAGCCTAGCAGTTGGTAGAAAGGGCAATGATAAACACAAGAGAGCTAAGAAATATTCGACGGGTGATGGCTTTGGTCTAGAGAAGGGAGTAAAATCAAGCAATGGAGCACGTGCAAGAGGAAAAGGGAACTTAAATCATTCAGAAGGTAGGAACCACGATACGGATGATAAATCTGAAGAAGAAGAAGAAGAAGGTGAATATTTTGATAGAAGTGGAAAGCTAGCGACAAAAGGTAAAATAGATGCTAAAAGGCAACACGATGACAGTGATAATTCTGATGATAGCCTTGCAGTTGATAGAAAGGGCAATGATAAACACAAGAGAGCTAAGAAATATTCGTCGGGTGATGATTCTGATCTAGAGAAGGGAGTAAAATCAAGTGGTGGAGCTCGTGAAAAAGGAAAAGGGAACTTTAATCATGCAGATGGTTTGGACAAGTTTAAGAAAGATTCCATCAATGAGTTCAGCCATGCACATACAGATACAATGAAAAGCAAGAGAAAGTTTGATGAAGGTGGTGAAAATGAGCAGCAGCTAGAGGCAAAGCCTATAAATCGCAATTCTACAAGAGAGTCAGATTTCCATGGCAACCCCAAGAAAGATTTCAAAAATGATTCTGAATCAATCCGAAGAGCACACAGTGGCTGGTATGATGAAACAAGGGATCGGCGGTACAGGGAAGATCCCAAAATTGACTCTGAATCAAACTCTAGATCACACTATAGTGCACGTGATGAGGGTGACGACAGAAAGTCAACTCGAACAGGAAGCAGATATAATGAAGAAACAGAGCATGGAAGTAGACATCACCGCAAGGCTAACGAGTCTCATCATCGCAGCAGGACTGATCAAGATACTGACGAGGAAAAAAGGCATAGCAGATATGAGGAGCCTAGAGGGAGAAAACACGAAAGAGACGAAGGTCTAAAATCGAGCAGGGAAGTTGAAAGAGGGGAGTATCAACCAAGTAGCAGGCAGAGATCTGAGAAAGATTATGAAACTAGAGAATCTACAAGAGATCGGGATGATTCCAGAAAGAGGGCCAGATATGATTCTCGATCAAGCAGACGTGATAATTATTAG 3108 41.6 MVLPLSLESSFLIQFLTFIYMVALYELILFQPRKDRRSILCESPNDLWSIHLNCIDLNPSNLMRTTPKSPPLPKASLTKKGYFVIADNIIQQIDDLQISPSLALSPSLLSQALFDFVVVSHSRLFFKCEVGEVKRCITTGKVAESSRGFEEDQGTAGVSKKPNKDILEHDRKRQIELKLVILEDKLTDQGYTMDEISEKLKEARETLEAASEEKDGASAIVLADKRVSDTQTHQIAARKEEQMKTFRAALGLGSLDDTEQAKEEISDPSRNRREGQNADIKRHEKSEHSFLDRELNWKKHGTEDQYDDKDDKKRVSKELKGHQKDRKRRSKDDSSDTDSGERKGTKKNLRDSIKNDSESDLDSDVGNKYVAARKSIKNRRHDSDDSSDPDSGGERNGTKKHMRDKRRDDPEIDSDSDFDQKYITSRKHKKNRRHDSDDSSHTDSGGEHKKTKKNMRNYQRDHGSHPDSDVDKKYTSKKQAKNTRHDSDDSDSFTDGDKFGMGSHKKGSGRHKSQKVKKQRSWKQESTDESNSDSGIDDKRRKLKHKNQHGKRYGVESDSSDHDSSDSDVGRKKSTHRHDSKRTGKRRVDSESDSEKSRKHPKKDVGRRGHDIDDEKSGDNSSSSDEIVKRRRGRRHNTDDESEEGEYFGRSDRVDTKGKKIAAKRQHDDSDNSDDSLAVGRKGNDKHKRAKKYSTGDGFGLEKGVKSSNGARARGKGNLNHSEGRNHDTDDKSEEEEEEGEYFDRSGKLATKGKIDAKRQHDDSDNSDDSLAVDRKGNDKHKRAKKYSSGDDSDLEKGVKSSGGAREKGKGNFNHADGLDKFKKDSINEFSHAHTDTMKSKRKFDEGGENEQQLEAKPINRNSTRESDFHGNPKKDFKNDSESIRRAHSGWYDETRDRRYREDPKIDSESNSRSHYSARDEGDDRKSTRTGSRYNEETEHGSRHHRKANESHHRSRTDQDTDEEKRHSRYEEPRGRKHERDEGLKSSREVERGEYQPSSRQRSEKDYETRESTRDRDDSRKRARYDSRSSRRDNY 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25698222 25706961 - ClCG08G012810.2 Cla08g01279 278934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01279 1035 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 139 792 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 325 363 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 431 504 - -
Cla08g01279 1035 Coils Coil 193 220 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 519 541 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 251 1035 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 861 945 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 376 424 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 550 574 - -
Cla08g01279 1035 Pfam cwf21 domain 167 208 IPR013170 -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 584 683 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 952 1035 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 257 318 - -
Cla08g01279 1035 Gene3D - 167 211 - -
Cla08g01279 1035 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 139 792 - -
Cla08g01279 1035 MobiDBLite consensus disorder prediction 742 852 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01279 K13172 SRRM2, SRM300; serine/arginine repetitive matrix protein 2 - csv:101212545 1270.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g265 . . . . . . . . Cmo05g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00585 Cpe11g00563 . . . . . . . . Cla08g01279 Cam08g1737 Cec08g1319 Cco08g1440 Clacu08g1434 . Cre08g1221 . Csa02g02337 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005994 2 3 0 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01279 Cla_Chr08 FPKM 0.0 0.0 1.007539 2.578321 0.0 1.217989 1.536031 9.295062 7.193172 10.331313