Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01285 | ATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAATATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTTCTGTGGCTCTACAGTCTGAATTCAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATCCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTTCTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCAGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCTGGGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAATCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGATGAGAACATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAATATCTAAGCAGTATATCATCAAACAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTCATGGTTTTCCTATTTTTTGTGGCATAG | 1017 | 42.67 | MAVKTAQSFRDRTLEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSSVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTSSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLANVEGAQGALLKYLSSISSNRWLMIKIFFVLIFFLMVFLFFVA | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25743861 | 25749137 | + | ClCG08G012870.1 | Cla08g01285 | 278940 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01285 | 338 | SUPERFAMILY | t-snare proteins | 52 | 301 | IPR010989 | GO:0016020|GO:0016192 | |
Cla08g01285 | 338 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 25 | IPR021538 | - | |
Cla08g01285 | 338 | SMART | tSNARE_6 | 241 | 308 | IPR000727 | - | |
Cla08g01285 | 338 | Pfam | SNARE domain | 282 | 334 | IPR000727 | - | |
Cla08g01285 | 338 | CDD | SNARE_syntaxin5 | 249 | 327 | - | - | |
Cla08g01285 | 338 | MobiDBLite | consensus disorder prediction | 209 | 242 | - | - | |
Cla08g01285 | 338 | MobiDBLite | consensus disorder prediction | 170 | 190 | - | - | |
Cla08g01285 | 338 | ProSitePatterns | Syntaxin / epimorphin family signature. | 252 | 291 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cla08g01285 | 338 | PANTHER | SYNTAXIN-32-LIKE | 7 | 337 | - | - | |
Cla08g01285 | 338 | PANTHER | SYNTAXIN | 7 | 337 | IPR045242 | - | |
Cla08g01285 | 338 | Gene3D | - | 50 | 301 | - | - | |
Cla08g01285 | 338 | MobiDBLite | consensus disorder prediction | 24 | 46 | - | - | |
Cla08g01285 | 338 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 246 | 308 | IPR000727 | - | |
Cla08g01285 | 338 | MobiDBLite | consensus disorder prediction | 168 | 242 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g00385 | Cla-Chr7:4637040 | Cla08g01285 | Cla-Chr8:25743861 | 3.23E-88 | dispersed | |
Cla08g01285 | Cla-Chr8:25743861 | Cla09g00505 | Cla-Chr9:4769104 | 7.06E-07 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01285 | K08490 | - | csv:101203633 | 535.028 |