Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01288 ATGGATGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTAATGGCACGACCTGAAAATTCTAACAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAGTTCAAATGGCTTAAATTCATCGCAGCCTGAAGATAGACCTTCAAGTAGTACCCGAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCGACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATCCTCTTCAATCCAGCCAGAATGCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCCACATCCTGCCCCATCTGCTAGAGGCAGTCAAGGGTCAGGAGTACTATCAGCAAGATTAAAAGTATTGGTGGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACATCAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGATGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAACGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATACGCTAACAACGATGAACTGAGAGAGTTGCCATGTGCACACTTTTTCCACAAGGACTGTGTAGATAAATGGTTGAAGATCAATGCCTTGTGCCCGCTTTGCAAAACCGAGGTTGGCGAGAGTATCATCAACTCTCTTGAGGGGACAAACAGACAACAACAGGGTGATTAG 1278 43.74 MDVPSVELNCESEGDSYPLLMARPENSNSSEHIIDITGTGDSAPSSLPHGRSSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDPLQSSQNASRINVPAGPFSLSVSRASEGEELPHPAPSARGSQGSGVLSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGDGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCAHFFHKDCVDKWLKINALCPLCKTEVGESIINSLEGTNRQQQGD 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25762056 25767485 - ClCG08G012900.1 Cla08g01288 278943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01288 425 Pfam Ring finger domain 363 404 IPR001841 -
Cla08g01288 425 CDD RING-H2_RNF111_like 362 404 - -
Cla08g01288 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cla08g01288 425 SUPERFAMILY RING/U-box 355 410 - -
Cla08g01288 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cla08g01288 425 SMART ring_2 363 403 IPR001841 -
Cla08g01288 425 MobiDBLite consensus disorder prediction 1 96 - -
Cla08g01288 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 422 - -
Cla08g01288 425 SMART ringv_2 362 404 IPR011016 GO:0008270
Cla08g01288 425 Coils Coil 412 425 - -
Cla08g01288 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 422 - -
Cla08g01288 425 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01288 Cla-Chr8:25762056 Cla09g02094 Cla-Chr9:38472958 2.43E-42 dispersed
Cla10g01576 Cla-Chr10:31229297 Cla08g01288 Cla-Chr8:25762056 8.26E-11 dispersed
Cla08g01288 Cla-Chr8:25762056 Cla07g01426 Cla-Chr7:31467728 1.39E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01288 - - csv:101211818 802.742