Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01290 ATGCCCGCCGTCTCATTCCATTTTTATGCACTCAAAGCTATGGCTGACTGGCTGATCGGAGAAAATGTTGGAATGGAGCTTCCAGTGAATGCTGCGGAACATGGTTCTGTGTCAACATGCACATATCTGAGCTCAATTCCTTTTCATATGGGTACCAGATGCAGTTTTCATTTCAAATTGCTAGCAACATTCTCTTTACGAGTTCAAATGCCAAGTTATAGCCGTGCATTTGCTTGTCCACACACAACAGCTCTGTTGAATATGATGAAAGAAAAGGTTGCTGTCAGAATCACGCGCTCCCAGTCTAATTCCTCAAGCAGACTAGGAGCTAATTCACCTTCATTGCAACTTTCACTCAAAGAATTGCGCAAACGTGGCCATACAGAAGACTCTGAACAAGCACAACTAGATGGAAGTAATGCTTCCACAACTATTACTGTTGGTGTTCGGCGCAAAAGAAGATCAGTGCTCAAGGATGTTACCAACATGTCCTGTGAGAGTAGTAATCTGGGGTGCTTGCATGCTTCTAAAGTTCAGGTGCAAGAGGTTTCACAGATGGAATCACTTGAAGATTCACCCGTTCAAAGGATGGCAGAATCACTAGGTACCTCTCCAGTGATGAGGTCAGACAAACAAGAGACAACACAGGCGAACAAGTTTCAGAGTGTCATAGGATGCAAAAATTGTGCGTTCCCCATGCCTTCAGGATCAAACGACCACCAAATGAAAGTTGAGGCTACGGTTTGTGAGAAATTAAACCATCTCGGTAGTTTGGATGCTATTTCAAACTCAGAAGATCCTCAAGCTTGCACCCTATATGCCAATAATATATATGATACTAATCGTGTTATAGAGCTCGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGCTAGTGGAGGCGTCAAACTCCTTATTTCAGGTTTCTGAAGAATATAAACTGATCTCTGACACACTTTACCTCACCGTGAATCTCATTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTTCTTGGTGTCACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTCTCTGTTCCTACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTTCAAGGAAACTTGTGTCGAGTTCGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGATTTCTGCCTTCAGCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGCATCAACCAAATCAACCATGGAACCTGGCTTTAGAGCATTATACCAATTACAATGTCTCCAAGTTAAGAACTTCAGTACTTGCCTTGGAAGATCTAAGATTGAACTCCACAGGTTGCCCTTTAAAAGCCGTATTCCAGAAGTATAGACAACAGAAGTTTGGAAGTGTGGCAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTTCCCCAACCAGACAGATACCTGA 1647 41.96 MPAVSFHFYALKAMADWLIGENVGMELPVNAAEHGSVSTCTYLSSIPFHMGTRCSFHFKLLATFSLRVQMPSYSRAFACPHTTALLNMMKEKVAVRITRSQSNSSSRLGANSPSLQLSLKELRKRGHTEDSEQAQLDGSNASTTITVGVRRKRRSVLKDVTNMSCESSNLGCLHASKVQVQEVSQMESLEDSPVQRMAESLGTSPVMRSDKQETTQANKFQSVIGCKNCAFPMPSGSNDHQMKVEATVCEKLNHLGSLDAISNSEDPQACTLYANNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEASNSLFQVSEEYKLISDTLYLTVNLIDRFLSQSYIERHRLQLLGVTCMLIASKYEEVCAPFVEEFCCITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVAQASFKETCVEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNLALEHYTNYNVSKLRTSVLALEDLRLNSTGCPLKAVFQKYRQQKFGSVATLTSTKSVLSAFPNQTDT 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25779251 25786323 - ClCG08G012920.1 Cla08g01290 278945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01290 548 CDD CYCLIN 410 490 IPR013763 -
Cla08g01290 548 Gene3D - 277 531 - -
Cla08g01290 548 Pfam Cyclin, C-terminal domain 412 534 IPR004367 -
Cla08g01290 548 SUPERFAMILY Cyclin-like 265 409 IPR036915 -
Cla08g01290 548 CDD CYCLIN 306 402 IPR013763 -
Cla08g01290 548 Gene3D - 290 410 - -
Cla08g01290 548 SUPERFAMILY Cyclin-like 411 536 IPR036915 -
Cla08g01290 548 Pfam Cyclin, N-terminal domain 277 410 IPR006671 -
Cla08g01290 548 SMART Cyclin_C_2 412 535 IPR004367 -
Cla08g01290 548 PANTHER CYCLIN-A2-4 131 537 - -
Cla08g01290 548 SMART cyclin_7 319 403 IPR013763 -
Cla08g01290 548 SMART cyclin_7 416 504 IPR013763 -
Cla08g01290 548 PANTHER CYCLINS 131 537 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00616 Cla-Chr8:18110480 Cla08g01290 Cla-Chr8:25779251 1.74E-89 dispersed
Cla08g01290 Cla-Chr8:25779251 Cla08g01600 Cla-Chr8:28660635 3.16E-69 dispersed
Cla05g01761 Cla-Chr5:29442722 Cla08g01290 Cla-Chr8:25779251 4.54E-121 wgd
Cla08g01290 Cla-Chr8:25779251 Cla09g00216 Cla-Chr9:2169330 2.46E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01290 K06627 - csv:101211578 763.066