Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01295 ATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGCTATTGATGCGCCTGGAGGCTTTCTTTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAAACACAGCCACAACAACAGCAACCACAACACATGCAGATGCTTCTAATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAACAACAACAACAGCATCAACAGCAACAACAGCCACAGCAGCAGCAACAACAGACTCAGCAACAACAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGAAATTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGTCAGAATCCCGGATCTGTAAATGCGTTGGCTACAAAAATGTACGAGGACAGATTAAAACTACCTCTTCAGAGGGATTCTCTAGATGATGCAGCTATGAAACAAAGGTATGGAGAAAACGTTGGGCAGCTGTTGGACCCAAATCATGCATCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTGCAGCTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGGCGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACCGGGCTAGAGCAACTACGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTTCTCAATCATTTCCTCAGCTTCATCAGATGTTGACACCACAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCTGTTACTGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCTTGCCTCGTGGAGATAGCACAGAAATGATCATTAAGATAAAAATGGCTCAAATGCATCAACAGCAGCAGCAACAGAATAGTAGCCAGCAACAGCAGCAGCATGCTCTTTCTAATCAACAGTCGCAAAGCTCAAACCACAATATGCCTCAGCAAGAAAAAATTGGGGGTGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCTTTTCGTGGAAATGATCAGGTTTCAAAAAATCAGGCTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACCCATACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGATGGCACTGGAACTTTTACATCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTTGTTGAGGATGGGTCTCTTGATGACAACGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTAGGGCGCTGCATGGATGGCAGCAAAGGTGCAGTGAATGCTATACCTTGCCATCTTATTCTTCTTGTTTCTTTGCAATTGCCAGCAAGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTTTTCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGCTAGTGGTGGCCAGGATAAGAAGGCTGTATTATGGTACACAGAAAATTTAAAGCCGAAAACTTCACTTGAAGAACATACTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGGCTTGCAACTTCATCATTCGATCGAACAGTCAGAGTTTGGGATGCTGACAATCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTACGTCTTTGGACTTCCATCCGAAGAAGGACGACTTTATTTGCTCTTGTGATAGTGATGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTATGGGCCAGATGAGATTTCAACCTCGTCTTGGGAGATACTTTGCTGCTTCTGTAGATAATATTGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATTCATTACAGGGACACACCCAAAAGGTTCAGTCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCTGTTCGAGTGTGGACGCTTGCTTCCGGGAATGAGGGCGAATCCATTCATGAGTTGAGCTGTAACGGCAATAAATTCCACTCTTGTGTTTTCCATCCCACCTATTCTACTTTGCTGGTCATTGGATGCTACCAGTCATTAGAGCTTTGGAACACGACTGAGAACAAGACGATGACTCTATCAGCTCATGAAGCTTTAATATCTTCCTTAGCAGTGTCCACGGCATCAGGTCTAGTTGCTTCGGCCAGCCACGACAAGCGGCGTCGACCTTTGCCATTCGATCAGCTTCGCCGGTGCTCGGAAATCCGTGATTTCTTCATTAGAGAGGTTGGCTTCTGGAACTCCCTGCTCCATCAAACCATAACAGAGTTCGTATTTTCCTTGTTCCAGTTGTTTGCTGTCCGTGTAATGTCTGAGGCAAGCAAGAGTCAGGGTACTTGCACCGAGCGCTTGATTGAGGAAACCAAATGTTTACAACCCCTTCAGGTGGATCCCGACAATGGAGTTTCCATGGATATACTAAAGGAGGACATGGATGAACTGAACCAGAGGAAAGTTACAATGGTGAAGGATTTGCAACTTTTACGTGATAGAGTCAATAAGGCGGGTGCTAATGTGGTGCAGAATCTGATGTCATGCTTAAAGACTTTGGAGGATCTCGGAAAGCAGGAATCTGAATTCCTATCTACTTGTAATTCAAAGCGTAGTAAATTGCAAGATGAGATTATCGAGCTGGAGGGAAGATTAACCAGTGACGGTGAATGCTCAAATTTCTTGGATAGCTTAGATGATTTGATTAGTGAATCTGAGGAGGAATTGAATTCCGTAAAGAAGGCACTCAGATCGAGCTTGAGGGAAACACTAGCATTAAAGAGGCTTCTTGATGATGTGCCAACCCAAACTGAACTCATCCAGTACGAGCGCCGATTTTCGGAGCTATACATTAACATCCAGGACAAACTTAGGCAAACACGCAGATACTATGCAACCTACAATGCACTCTTGGAGATAAAGGATCTGATGTTAAAGGAGACATCCTTATTGAATTCCATAAGTTCACAGTTTCAAGATGCCATAGCCAGCTCCACAAGTCAAATGAAACTTATTGATTCCATGGAGGGAATTCTGAAAGGCATTCAACAGAAACTAGATAAGGTGCATCTCTCTCATCAAGAAGAGCAGCAGGTCTGCAATGCTTTGAAAGAGAAATATGCTGCAGCAACTGCTGAGCAAAGACGTTGCTATACACTCTTAAAAGCTTTCCAGGAGGAATGTGCAAAGAACGAGAAGCTTCGGACCCAAAATTTCATGTGA 3789 44.26 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGNSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGAAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQASQSFPQLHQMLTPQHQQQLMLAQQNLTSPSVTDDGRRLRMLLNSRMAKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDSTEMIIKIKMAQMHQQQQQQNSSQQQQQHALSNQQSQSSNHNMPQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQAGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGAVNAIPCHLILLVSLQLPARFTFTEVNSVRASSSKVFSCHFSSDGKLLASGGQDKKAVLWYTENLKPKTSLEEHTSMITDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVTSLDFHPKKDDFICSCDSDGEIRYWNITNGSCAAVFKGGMGQMRFQPRLGRYFAASVDNIVSIFDVETQARLHSLQGHTQKVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEALISSLAVSTASGLVASASHDKRRRPLPFDQLRRCSEIRDFFIREVGFWNSLLHQTITEFVFSLFQLFAVRVMSEASKSQGTCTERLIEETKCLQPLQVDPDNGVSMDILKEDMDELNQRKVTMVKDLQLLRDRVNKAGANVVQNLMSCLKTLEDLGKQESEFLSTCNSKRSKLQDEIIELEGRLTSDGECSNFLDSLDDLISESEEELNSVKKALRSSLRETLALKRLLDDVPTQTELIQYERRFSELYINIQDKLRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIASSTSQMKLIDSMEGILKGIQQKLDKVHLSHQEEQQVCNALKEKYAAATAEQRRCYTLLKAFQEECAKNEKLRTQNFM 1262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25832447 25851688 - ClCG08G012970.2 Cla08g01295 278950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01295 1262 Gene3D - 767 916 IPR015943 GO:0005515
Cla08g01295 1262 ProSiteProfiles Trp-Asp (WD) repeats profile. 675 710 IPR001680 GO:0005515
Cla08g01295 1262 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Cla08g01295 1262 MobiDBLite consensus disorder prediction 89 180 - -
Cla08g01295 1262 ProSiteProfiles Trp-Asp (WD) repeats profile. 633 674 IPR001680 GO:0005515
Cla08g01295 1262 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 718 756 - -
Cla08g01295 1262 Coils Coil 1084 1111 - -
Cla08g01295 1262 SMART WD40_4 754 790 IPR001680 GO:0005515
Cla08g01295 1262 SMART WD40_4 837 876 IPR001680 GO:0005515
Cla08g01295 1262 SMART WD40_4 626 665 IPR001680 GO:0005515
Cla08g01295 1262 SMART WD40_4 878 925 IPR001680 GO:0005515
Cla08g01295 1262 SMART WD40_4 793 831 IPR001680 GO:0005515
Cla08g01295 1262 SMART WD40_4 668 707 IPR001680 GO:0005515
Cla08g01295 1262 SMART WD40_4 711 751 IPR001680 GO:0005515
Cla08g01295 1262 MobiDBLite consensus disorder prediction 250 270 - -
Cla08g01295 1262 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 675 710 - -
Cla08g01295 1262 Coils Coil 1053 1073 - -
Cla08g01295 1262 SMART Lish 8 40 IPR006594 GO:0005515
Cla08g01295 1262 Coils Coil 996 1023 - -
Cla08g01295 1262 Gene3D - 618 766 IPR015943 GO:0005515
Cla08g01295 1262 MobiDBLite consensus disorder prediction 414 540 - -
Cla08g01295 1262 Pfam WD domain, G-beta repeat 715 751 IPR001680 GO:0005515
Cla08g01295 1262 Pfam WD domain, G-beta repeat 633 664 IPR001680 GO:0005515
Cla08g01295 1262 Pfam WD domain, G-beta repeat 671 707 IPR001680 GO:0005515
Cla08g01295 1262 Pfam WD domain, G-beta repeat 797 830 IPR001680 GO:0005515
Cla08g01295 1262 ProSiteProfiles Trp-Asp (WD) repeats profile. 718 760 IPR001680 GO:0005515
Cla08g01295 1262 MobiDBLite consensus disorder prediction 414 452 - -
Cla08g01295 1262 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 911 - -
Cla08g01295 1262 CDD WD40 629 914 - -
Cla08g01295 1262 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 911 IPR044716 GO:0003714
Cla08g01295 1262 ProSitePatterns Trp-Asp (WD) repeats signature. 694 708 IPR019775 -
Cla08g01295 1262 MobiDBLite consensus disorder prediction 238 293 - -
Cla08g01295 1262 SUPERFAMILY WD40 repeat-like 625 911 IPR036322 GO:0005515
Cla08g01295 1262 Pfam LisH 10 36 IPR006594 GO:0005515
Cla08g01295 1262 MobiDBLite consensus disorder prediction 459 519 - -
Cla08g01295 1262 Coils Coil 1215 1235 - -
Cla08g01295 1262 ProSiteProfiles Trp-Asp (WD) repeats profile. 800 840 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01295 - - - csv:101221759 1308.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00899 Cla-Chr8:21472502 Cla08g01295 Cla-Chr8:25832447 1.92E-11 dispersed
Cla08g01295 Cla-Chr8:25832447 Cla11g01258 Cla-Chr11:26103111 2.79E-06 dispersed
Cla05g00355 Cla-Chr5:3213473 Cla08g01295 Cla-Chr8:25832447 6.15E-40 transposed
Cla06g01040 Cla-Chr6:22472529 Cla08g01295 Cla-Chr8:25832447 6.13E-22 transposed
Cla07g01238 Cla-Chr7:29394724 Cla08g01295 Cla-Chr8:25832447 3.59E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61587 PF00400 WD40 1.70E-05 CL0186 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01295 Cla_Chr08 FPKM 7.329114 8.504202 10.019472 13.465694 14.522195 12.871219 13.875113 12.794762 8.248198 10.848596