Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01299 ATGTCCAGCGCCGCCGTGCTTGCACGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATATCTCCGTACACCTTCTCCGCCATCGGTATCGCCATCGCCATTGGGGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAAACCAAGTTAGAGAGCGTGTCAGCATCTCAGATATATGCACCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTCGTGAAGATTCTTGTAATTGAGATCTTTGGCAGTGCACTTGGGTTGTTTGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA 549 47.91 MSSAAVLARSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25908834 25910683 + ClCG08G013010.1 Cla08g01299 278954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01299 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cla08g01299 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cla08g01299 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cla08g01299 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cla08g01299 182 Gene3D - 23 177 IPR035921 -
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cla08g01299 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cla08g01299 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01299 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01299 K03661 ATPeV0B, ATP6F; V-type H+-transporting ATPase 21kDa proteolipid subunit - csv:101221052 323.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01441 Cla-Chr8:27277191 Cla08g01299 Cla-Chr8:25908834 6.96E-19 transposed
Cla11g01536 Cla-Chr11:29002462 Cla08g01299 Cla-Chr8:25908834 2.93E-21 transposed
Cla05g01759 Cla-Chr5:29416695 Cla08g01299 Cla-Chr8:25908834 3.23E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla02g00497 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT2G21410 64.9 0.0e+00 1109.7
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 3.0e-299 1024.6
Cla02g00497 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT4G39080 65.5 0.0e+00 1110.1
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.3e-298 1021.1
Cla08g01441 . 160 298 Primary Pumps ATPases(2) AT4G34720 99.3 3.8e-61 231.1
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cla11g01536 . 75 238 Primary Pumps ATPases(2) AT1G75630 80.3 3.3e-66 248.4
Cla08g01441 . 2 164 Primary Pumps ATPases(2) AT1G75630 79.7 1.8e-64 242.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla11g01536 . 74 195 Primary Pumps ATPases(2) AT1G19910 99.2 5.6e-53 203.8
Cla08g01441 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cla08g01299 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.2e-70 261.9
Cla05g01759 . 2 201 Primary Pumps ATPases(2) AT2G25610 64.5 1.7e-55 213.0
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01441 . 161 298 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01299 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.6e-71 266.2
Cla05g01759 . 19 201 Primary Pumps ATPases(2) AT4G32530 63.8 1.0e-57 220.3
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07810 78.2 0.0e+00 1655.6
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07670 78.0 0.0e+00 1655.2
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla03g00170 . 22 1078 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1304.3
Cla03g01661 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.0e-57 217.6
Cla02g00408 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.7e-268 920.2
Cla10g01933 . 300 407 Primary Pumps ATPases(2) AT3G01390 80.6 3.9e-37 151.0
Cla01g00801 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 1.3e-180 629.4
Cla09g02164 . 1027 1274 Primary Pumps ATPases(2) AT3G58730 82.3 1.1e-111 399.8
Cla10g01560 . 43 495 Primary Pumps ATPases(2) AT3G42050 77.7 2.0e-201 698.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla02g00408 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 3.0e-270 927.5
Cla05g01452 . 92 273 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cla02g00408 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.8e-266 912.5
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28715 82.6 5.4e-186 647.1
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT4G11150 76.4 1.6e-85 312.8
Cla09g00150 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cla02g00408 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.7e-268 920.2
Cla02g00408 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 3.0e-270 927.5
Cla02g00408 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.8e-266 912.5
Cla01g00801 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 1.3e-180 629.4
Cla09g02164 . 1027 1274 Primary Pumps ATPases(2) AT3G58730 82.3 1.1e-111 399.8
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT4G11150 76.4 1.6e-85 312.8
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT3G08560 68.5 7.7e-75 277.3
Cla05g01452 . 92 273 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cla03g01661 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.0e-57 217.6
Cla10g01933 . 300 407 Primary Pumps ATPases(2) AT3G01390 80.6 3.9e-37 151.0
Cla10g01560 . 43 495 Primary Pumps ATPases(2) AT3G42050 77.7 2.0e-201 698.7
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla02g00497 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT2G21410 64.9 0.0e+00 1109.7
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 3.0e-299 1024.6
Cla02g00497 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT4G39080 65.5 0.0e+00 1110.1
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.3e-298 1021.1
Cla08g01441 . 160 298 Primary Pumps ATPases(2) AT4G34720 99.3 3.8e-61 231.1
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cla11g01536 . 74 195 Primary Pumps ATPases(2) AT1G19910 99.2 5.6e-53 203.8
Cla08g01441 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01441 . 161 298 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla11g01536 . 75 238 Primary Pumps ATPases(2) AT1G75630 80.3 3.3e-66 248.4
Cla08g01441 . 2 164 Primary Pumps ATPases(2) AT1G75630 79.7 1.8e-64 242.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla08g01299 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.6e-71 266.2
Cla05g01759 . 19 201 Primary Pumps ATPases(2) AT4G32530 63.8 1.0e-57 220.3
Cla08g01299 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.2e-70 261.9
Cla05g01759 . 2 201 Primary Pumps ATPases(2) AT2G25610 64.5 1.7e-55 213.0
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28710 84.7 4.7e-193 670.6
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28715 82.6 5.4e-186 647.1
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07810 78.2 0.0e+00 1655.6
Cla03g00170 . 22 1078 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1304.3
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07670 78.0 0.0e+00 1655.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001947 2 4 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 1 2 1 2 2 3 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01299 Cla_Chr08 FPKM 4.156086 4.572415 1.668408 1.843068 4.549426 4.767559 3.241454 0.0 0.0 0.0