Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01299 ATGTCCAGCGCCGCCGTGCTTGCACGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATATCTCCGTACACCTTCTCCGCCATCGGTATCGCCATCGCCATTGGGGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAAACCAAGTTAGAGAGCGTGTCAGCATCTCAGATATATGCACCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTCGTGAAGATTCTTGTAATTGAGATCTTTGGCAGTGCACTTGGGTTGTTTGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA 549 47.91 MSSAAVLARSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25908834 25910683 + ClCG08G013010.1 Cla08g01299 278954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01299 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cla08g01299 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cla08g01299 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cla08g01299 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cla08g01299 182 Gene3D - 23 177 IPR035921 -
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01299 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cla08g01299 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cla08g01299 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01299 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01441 Cla-Chr8:27277191 Cla08g01299 Cla-Chr8:25908834 6.96E-19 transposed
Cla11g01536 Cla-Chr11:29002462 Cla08g01299 Cla-Chr8:25908834 2.93E-21 transposed
Cla05g01759 Cla-Chr5:29416695 Cla08g01299 Cla-Chr8:25908834 3.23E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01299 K03661 - csv:101221052 323.939