Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01308 ATGGGGGCTCCGTTCGAGGGAATAGTAAAGGATTTGAAGGGAAGGGCGGCGTGCTATAAACAGGATTGGATAAGTGCACTATGTTCTGGCGTCAGGATTTTGGCTCCTACTATGTACATTTTCTTCGCCTCAGCTCTACCTGTTATTGCCTTTGGGGAGCAACTTAGTAGGGATACAGGTGGAAGATTGAGCACCGTGGAAACATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATCTTTGGGGGACAGCCTTTGTTGATTTTAGGAGTGGCAGAACCAACTGTTATAATGTACATTTACTTGTACAGTTTCTCCCAAGGCCGGCCAGAGTTAGGAGGCGATCTCTTTTTAGCTTGGGCTGGATGGGTGTGCATTTGGACAGGATTCTTCCTGATCCTCCTTGCAATCTTTAATGCTTGCACCGTCATCACCAAATTTACCAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATAAGCGAATTCCAGATTCCCAAGTCAGAAAAGCCAGAGGTATTGGAGTACCAATTTGAGTGGTTGTATGCAAATGGGTTGCTTGCGGTAATTTTTTCAATGGGTCTACTCTTCACAGCCTTGAAAAGCAGACATGCAAGATCGTGGAAATATGGAACTGGCTGGTTCCGGAGTTTCATTGCGGACTATGGGGTTCCACTTATGGTTGTGTTCTGGACAGCATTGTCGTATGGAGTTCCCGGTGAAGTTCCAAATGGAGTTCCAAGGAGACTCTTTTGCCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGACTGTAGTGAAGGACATGGGTAAGGTTCCATTGACTTACATCTTTGCTGCAACTCTGCCAGCCGTCATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCGCAAATGGCGCAACAGAAAGAGTTTAATCTTCAAAATCCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGGTAAATATTTGTACCTTGATTTCTTTTGCCTTATGTATTTATCCTTTTACCAATCCATGCTCTCTCGCCAGCATCACCAACTGCTGTGTTTTGTTGTTGCAGACTGTGATTTGTGGATTGCTTGGATTGCCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTTGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAAGGAATGTATCAAACAAAAAGCAAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACGCATCTCCAACTGTAATGCTCTATTCTAACCCCTACTCCCTTCTTTCTTACTCCAAGAACGGGTTATCTCATGCACCTTATTTGCTCTTTTTGCAGCCTAAAGAGCTAGAAACCTTGACGAAGGCAGTAATGAATGCTGATGAAGGTGATCGAAAGGGAAAATTCGATGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTGCTGCAGTCTTTCCTTGTTGCTGTATTAATATTTGCTATCCCTATAATGAGAATGATACCTACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCTGTTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTGTTACTCTTCATTACACCCGGTCGGCGTTTCAAAGTCTTGGAGGGGTCTCATTTATCTTTCGTTGAATCTGTGCCATTCAAGATCATTGCTACGTTTACCCTCCTCCAGTTTGCATATTTCCTGTTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTAGATGCTTCAGAGTATGAGGAGATTGCTGGTGCCGGACATCGCGCCATTAATCTCACAGCACCAGAAAAGGAGCCACCTGATTCAATTGCGGAAGAGAGTAACGAAGAATACTATGATGCCGAGATATTAGATGAGATGACAACTCATAGAGGAGAATTAAAGCTTAGAACTGTAAGTTCATCCCGAAGATTCCCTTCGAATGCAATGAAGCAGTTGCAGGCAAATAGGATAAGAGGGTGTTTGATCGAGCCGAATACAACGAATAATACGAAAGACAGTTGGTTACGATCAGTATAG 2235 43.71 MGAPFEGIVKDLKGRAACYKQDWISALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGRLSTVETLASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYSFSQGRPELGGDLFLAWAGWVCIWTGFFLILLAIFNACTVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFQIPKSEKPEVLEYQFEWLYANGLLAVIFSMGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVFWTALSYGVPGEVPNGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAATLPAVMIAGLYFFDHSVASQMAQQKEFNLQNPSAYHYDVFLLGIMVNICTLISFALCIYPFTNPCSLASITNCCVLLLQTVICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDASPTVMLYSNPYSLLSYSKNGLSHAPYLLFLQPKELETLTKAVMNADEGDRKGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVAVLIFAIPIMRMIPTSVLWGYFAYMAVDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVESVPFKIIATFTLLQFAYFLLCFGVTWIPVAGILFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGAGHRAINLTAPEKEPPDSIAEESNEEYYDAEILDEMTTHRGELKLRTVSSSRRFPSNAMKQLQANRIRGCLIEPNTTNNTKDSWLRSV 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25973518 25977323 + ClCG08G013090.2 Cla08g01308 278963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01308 744 PANTHER BORON TRANSPORTER 6-RELATED 368 446 - -
Cla08g01308 744 PANTHER ANION EXCHANGE PROTEIN 3 347 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cla08g01308 744 Pfam HCO3- transporter family 4 177 IPR011531 GO:0006820|GO:0016021
Cla08g01308 744 Pfam HCO3- transporter family 196 347 IPR011531 GO:0006820|GO:0016021
Cla08g01308 744 Pfam HCO3- transporter family 507 597 IPR011531 GO:0006820|GO:0016021
Cla08g01308 744 PANTHER ANION EXCHANGE PROTEIN 368 446 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cla08g01308 744 PANTHER BORON TRANSPORTER 6-RELATED 471 708 - -
Cla08g01308 744 PANTHER BORON TRANSPORTER 6-RELATED 3 347 - -
Cla08g01308 744 Gene3D Helical hairpin bin 15 57 - -
Cla08g01308 744 PANTHER ANION EXCHANGE PROTEIN 471 708 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00499 Cla-Chr1:5339958 Cla08g01308 Cla-Chr8:25973518 0 dispersed
Cla08g01308 Cla-Chr8:25973518 Cla10g01116 Cla-Chr10:25530225 0 dispersed
Cla07g01228 Cla-Chr7:29250432 Cla08g01308 Cla-Chr8:25973518 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01308 K24194 - csv:101220188 1184.47