Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01312 ATGACAAAGAAGAAGAACCCTTTGGTTTTTCTGGATGTCTCAATTGATGGAGACCCCAGGGAAAGAATGGTTTTTGAGCTGTTTTATGACGTTGCTCCAAAAACGGCCGAGAATTTTCGTGCACTGTGTACAGGAGAGAAAGGAATTGGCCCCAAAACTGGAAGACCACTACATTATAAGGGGTCCTTTTTTCATCGGATTATTGGAGGTTCTATGGCACAGTCAGTTACCCTTGTTTATGCTGTAGGCTACAGGGCTGATGGTCAAGAATCCTTTTCTTGTGATGGTGGAGATTTTGTCAAGCGAGATGGTTTTTGCATGATGATGAAAGTTAATTCTTCCCTGCTCTTAACTTACTCAGGTACTGTTGGAGAGAGCATATACGGTGGGAAGTTTCCAGGGACTAGAAAGTCTATGGTCATGGAGCCCCACTTGTTGTTTTCCATGAGGTTCTTCCCCTACATTGATAGGTTTCCATTTCATCCAAGTCTGCAGTGTCTGGCACTATGTTTGTATTGTGACCGTTACTGCATGGCTTTCTTTTGTTTAGATAAGTATGAACTTCCTCGACTAAAACATGATGGACCTGGCCTTCTATCAATGGCAATTGCTGACCGTGACACTCTAGGCTCCCATTTTCTTATCACATTTAAGGCTAATAATCATCTCGACAGGAAGCATGTAGTATTTGGAAAGCTTGTCCAAGGTTTTGACGTACTGAAAAAGATAGAAAGAGTGGATGTAGAAGATGGCGTTCCAACTGTTACAGTGAAAATTGTTAATTGTGGCGAGTTTAATGAAGAAAAAAGAAAGATGAATAGAGTTAAAACAGGAAAAAATGCTTCAGATGATGATAGTCATGAAGAAAAGCGAAGAGGAAAGCAGAAAAAATCAAGGGAAAGGAAGAGGAGGAAGAAAAAATACGACACGTCCGATTCAGATAGTTCTTCTGATTCAGACTTAGACTCTGACTCTGAGAGTGTTTCTGACACAGATTTGTCGTCGTCATCATCTTCTTCTGAAAGTTCTTCCAGTGATGACAGGTCTAGAAAGAGAAAGAGGACTTCTAAGAGAGGCAGATATAGGCGTGGGAGAAAAAAGGATAAGAGACGTGAACGAAAGAGACGGAGGCACGATAAGAAGTCAAAGAGAAAATCTAAAAGGGACTTGGACAGTCTTACGGATACTGAAAGTGATAGCAAGAGCAGAAGCACGTCTGAGCAAGATGGCCTTGATGTTCAAGGAAAAGATCTAAACCGTAAAGGCTTGTCAGTGAAATCTGCTGAAGATGCACCTCAAGCCTCAGATGCCCGCCACAGAAGGAGAGAGGCAGATATGGTGGAAAATGATGGGGAGAGATCCCCTAAGGAGAATGGTGAGCGAAGGAGCAATGGCATTGCTGCTGTGGAATCTAAATCTGACAGAAGCTTGGAAAGACAACCTGATATTGTAGATGACCACCCTGGAAAATCTAGGAGTCGAAGCATTAGTCCTAGAAGGACGATGAGTAAGAGTATGAGTATTAGTCCCCGAAAGAGTCACAGCAAGAGCCGTAGTGTTAGTCCAAAACGAAGTATGAGCAGGAGTCGAAGTGTTAGTGGAAGCCCGCCTCGAGCACCATTGAGGAGCAGGAGCATCAGCAGAAGTCCTGTTCGAAATGGTAGCAGGAGCGTCAGCAGAAGTCCTGTTAGAAATGGTAGCCGAAGCCCAGGTAGAAGTATTAGCAGGAGCCCAGGTAGGGGAAGGAAAGGTAGGAGTATTAGTAGAAGCCCAGTACGAAGCGGGCCTCAGAGAGGTATTAGCAGAAGCCCCGTGAGATCCAATCCACAGAGAAGTCCAAGCAGGAGCCCACCTAGAAGAGCCTCTAGAAAATCAATTAGTAGGAGTCCTGCAAGAGTTTCCAGAAGCGTAAGCAGAAGTCCAGTGAGGTCCTCTCGTCAGAGTTTGAGCAGGAGCTCAGGTAGGGCACCTTCTAGGAGGAGTATCAGTCGAAGTCCTCGGGCACCAGCTAGGAATCGAAGGAGCTACTCTAGGAGTCTTACTCCTGTCCGAAGGCCAAGGTCACCGGCTTCTGATAGAGGGAGAAGTGCATCAAGAAGTGTTTCTCCAGAAGGTTCTCCTAAGCGCATCAGAAGGGGGCGTGGTTTTAGTGAGCGTTATTCATTTGCTCGAAGATACAGAACACCCTCTGCATCTCCTGTCAGGTCATACCGTTACAGTGGAAGAGTTGAACGTGACAGATATTCAAATTACAGAAGGTATTCTCCTAGGCGCTATAGAAGCCCTCCTAGAGGAAGATCTCCGCTAAGATACAGAAACAGAAGAAGCAGGACTCCTTCTGCATCCCGTAGTCCTCGTTACCGTAGTCGTCGTTATAGCCGTAGCCGAAGCCCTATTAGGAGCCGTTCCCCAGTTGAGGGATCCAGGTCTCGTTTGTCTCCTAGAGTAGTTAGGCGGAGATCTCCTTCAAGGAGCAGATCCCCATCAAAATCAAGGTCCCCTGCTGATTCACCATCCCCAAGAAGAACGAGCAGAGATAGGTCCAGGTCACCTTCTGGTAGTCCAGATGGGAAGAAGGGTCTGGTTTCTTACGGTGATGGATCTCCAGATTCAGAGAGGTGA 2622 45.92 MTKKKNPLVFLDVSIDGDPRERMVFELFYDVAPKTAENFRALCTGEKGIGPKTGRPLHYKGSFFHRIIGGSMAQSVTLVYAVGYRADGQESFSCDGGDFVKRDGFCMMMKVNSSLLLTYSGTVGESIYGGKFPGTRKSMVMEPHLLFSMRFFPYIDRFPFHPSLQCLALCLYCDRYCMAFFCLDKYELPRLKHDGPGLLSMAIADRDTLGSHFLITFKANNHLDRKHVVFGKLVQGFDVLKKIERVDVEDGVPTVTVKIVNCGEFNEEKRKMNRVKTGKNASDDDSHEEKRRGKQKKSRERKRRKKKYDTSDSDSSSDSDLDSDSESVSDTDLSSSSSSSESSSSDDRSRKRKRTSKRGRYRRGRKKDKRRERKRRRHDKKSKRKSKRDLDSLTDTESDSKSRSTSEQDGLDVQGKDLNRKGLSVKSAEDAPQASDARHRRREADMVENDGERSPKENGERRSNGIAAVESKSDRSLERQPDIVDDHPGKSRSRSISPRRTMSKSMSISPRKSHSKSRSVSPKRSMSRSRSVSGSPPRAPLRSRSISRSPVRNGSRSVSRSPVRNGSRSPGRSISRSPGRGRKGRSISRSPVRSGPQRGISRSPVRSNPQRSPSRSPPRRASRKSISRSPARVSRSVSRSPVRSSRQSLSRSSGRAPSRRSISRSPRAPARNRRSYSRSLTPVRRPRSPASDRGRSASRSVSPEGSPKRIRRGRGFSERYSFARRYRTPSASPVRSYRYSGRVERDRYSNYRRYSPRRYRSPPRGRSPLRYRNRRSRTPSASRSPRYRSRRYSRSRSPIRSRSPVEGSRSRLSPRVVRRRSPSRSRSPSKSRSPADSPSPRRTSRDRSRSPSGSPDGKKGLVSYGDGSPDSER 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26027462 26036441 + ClCG08G013140.1 Cla08g01312 278967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01312 873 MobiDBLite consensus disorder prediction 757 781 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 627 660 - -
Cla08g01312 873 SUPERFAMILY Cyclophilin-like 6 264 IPR029000 -
Cla08g01312 873 Gene3D - 1 266 IPR029000 -
Cla08g01312 873 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 191 539 - -
Cla08g01312 873 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 132 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 385 406 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 328 343 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 668 684 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 524 574 - -
Cla08g01312 873 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Cla08g01312 873 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Cla08g01312 873 MobiDBLite consensus disorder prediction 351 384 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 839 853 - -
Cla08g01312 873 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 264 IPR002130 GO:0000413|GO:0003755
Cla08g01312 873 MobiDBLite consensus disorder prediction 495 515 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 270 293 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 739 753 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 432 460 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 705 721 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 472 493 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 590 616 - -
Cla08g01312 873 MobiDBLite consensus disorder prediction 270 873 - -
Cla08g01312 873 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 191 539 - -
Cla08g01312 873 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 132 - -
Cla08g01312 873 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 263 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01312 K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G) [EC:5.2.1.8] - csv:101210345 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01312 Cla-Chr8:26027462 Cla09g00689 Cla-Chr9:6689203 4.34E-57 dispersed
Cla08g01312 Cla-Chr8:26027462 Cla09g01711 Cla-Chr9:34266441 2.26E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105