Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01314 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGGATCCATGTAGTAACTATCAGGATTGCTTGGATTTTAGGCCTCAATCTTTTCATGAATGCAATAACAAAGAAACATTTGGGGGAGCTTTTCAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAAAAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTTTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAACGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTAGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTAATGACCATAATGCGACAGCATTAAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATGCCTCCCCCTCCCCCACCCCTCACCCCACGCAACAAATAA 1923 42.28 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKDPCSNYQDCLDFRPQSFHECNNKETFGGAFQPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKATSYDPEFSVLNLDAASNNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEKTCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESLHIVLERRHQIESRDPFAFAPRVIEDRNELPVNNENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLINDHNATALSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDIFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSSILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYGNENEVGMNNSLGRLKSHRYILKSMPPPPPPLTPRNK 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26049978 26055291 - ClCG08G013160.2 Cla08g01314 278969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01314 640 ProSiteProfiles CRC domain profile. 321 447 IPR005172 -
Cla08g01314 640 MobiDBLite consensus disorder prediction 286 300 - -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 139 637 IPR044522 GO:0003700
Cla08g01314 640 SMART CXC_2 407 448 IPR033467 -
Cla08g01314 640 SMART CXC_2 320 361 IPR033467 -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 139 637 - -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 104 - -
Cla08g01314 640 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 409 444 IPR005172 -
Cla08g01314 640 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 323 358 IPR005172 -
Cla08g01314 640 MobiDBLite consensus disorder prediction 286 323 - -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 104 IPR044522 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01314 K21776 LIN54; protein lin-54 - pvy:116113015 261.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00518 Cla-Chr5:4802217 Cla08g01314 Cla-Chr8:26049978 6.91E-44 dispersed
Cla06g00599 Cla-Chr6:7267377 Cla08g01314 Cla-Chr8:26049978 4.01E-45 dispersed
Cla08g01314 Cla-Chr8:26049978 Cla11g00214 Cla-Chr11:2487351 3.05E-28 dispersed
Cla07g01225 Cla-Chr7:29213260 Cla08g01314 Cla-Chr8:26049978 1.87E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g315 . . . . . . . Bma01g02162 . . . Cma05g00464 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 . . . .
Vvi4g451 . . . . . . . . . . . Cma05g00400 . . . . . . . . . . . . . . . . . . . . . Cone17ag1032 Cone20ag0663 . . . . . . . . . . . . . . . . . . Car05g00334 . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 Lsi08g01178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g00599 . 171 494 CPP Transcription Factor Family AT3G22760 50.2 2.9e-76 283.1
Cla08g01314 . 325 450 CPP Transcription Factor Family AT3G22780 57.1 2.6e-38 157.5
Cla08g01314 . 297 450 CPP Transcription Factor Family AT4G14770 51.3 5.9e-40 162.9
Cla11g00214 CCT,ECH 667 1096 CPP Transcription Factor Family AT2G20110 61.9 5.8e-142 501.5
Cla08g01314 . 325 459 CPP Transcription Factor Family AT3G04850 52.2 6.0e-37 152.9
Cla11g00214 CCT,ECH 604 1103 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cla06g00866 CCT,ECH 407 730 CPP Transcription Factor Family AT4G29000 51.5 2.3e-75 280.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61589 PF03638 TCR 1.40E-10 No_clan Cla TF