Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01314 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGGATCCATGTAGTAACTATCAGGATTGCTTGGATTTTAGGCCTCAATCTTTTCATGAATGCAATAACAAAGAAACATTTGGGGGAGCTTTTCAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAAAAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTTTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAACGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTAGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTAATGACCATAATGCGACAGCATTAAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAAGGTTGAAGAGCCATAGATATATATTGAAGTCCATGCCTCCCCCTCCCCCACCCCTCACCCCACGCAACAAATAA 1923 42.28 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKDPCSNYQDCLDFRPQSFHECNNKETFGGAFQPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKATSYDPEFSVLNLDAASNNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEKTCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESLHIVLERRHQIESRDPFAFAPRVIEDRNELPVNNENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLINDHNATALSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDIFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSSILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYGNENEVGMNNSLGRLKSHRYILKSMPPPPPPLTPRNK 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26049978 26055291 - ClCG08G013160.2 Cla08g01314 278969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01314 640 ProSiteProfiles CRC domain profile. 321 447 IPR005172 -
Cla08g01314 640 MobiDBLite consensus disorder prediction 286 300 - -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 139 637 IPR044522 GO:0003700
Cla08g01314 640 SMART CXC_2 407 448 IPR033467 -
Cla08g01314 640 SMART CXC_2 320 361 IPR033467 -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 139 637 - -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 104 - -
Cla08g01314 640 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 409 444 IPR005172 -
Cla08g01314 640 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 323 358 IPR005172 -
Cla08g01314 640 MobiDBLite consensus disorder prediction 286 323 - -
Cla08g01314 640 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 104 IPR044522 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00518 Cla-Chr5:4802217 Cla08g01314 Cla-Chr8:26049978 6.91E-44 dispersed
Cla06g00599 Cla-Chr6:7267377 Cla08g01314 Cla-Chr8:26049978 4.01E-45 dispersed
Cla08g01314 Cla-Chr8:26049978 Cla11g00214 Cla-Chr11:2487351 3.05E-28 dispersed
Cla07g01225 Cla-Chr7:29213260 Cla08g01314 Cla-Chr8:26049978 1.87E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61589 PF03638 TCR 1.40E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01314 K21776 - pvy:116113015 261.151