Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01315 ATGAAAAACCTAAAACGGCCACTGAGTCACAGAGTAATTGGTAAGCGAAAGCCAAAGCCAAAACCTCTTCACCGGTATAAAAACCACCACCACCGGCTGTTTCACCAGAGAAACGTGAATCAAGCCATTGAAACCGAACCGCCATCACTTCAACTTCACGCACAAGGACTAAATTTGCAGGGAAAAAAAAAAAACAGGATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCACCGATGTGGAGAGCCTAGGGCCGATTTCGGCGGCGGAAGCTACGGCGGCGGAAGAGTTGTTGGTTCTTCGTCCTTCGGTTTCACCACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAGGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGATCGGATTGCAATGAGCATAACTTTGCCAGCCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAGGTCGCCATACTCGTAAAGGTGGTGCCAATGGAAGGAATAAATTCTAG 678 52.65 MKNLKRPLSHRVIGKRKPKPKPLHRYKNHHHRLFHQRNVNQAIETEPPSLQLHAQGLNLQGKKKNRMSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGSYGGGRVVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSDRIAMSITLPAEGNALDAMRQGIPTAGRHTRKGGANGRNKF 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26063486 26065707 + ClCG08G013170.1 Cla08g01315 278970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01315 225 ProSitePatterns Zinc finger RanBP2-type signature. 128 149 IPR001876 -
Cla08g01315 225 MobiDBLite consensus disorder prediction 1 25 - -
Cla08g01315 225 Gene3D - 120 156 - -
Cla08g01315 225 Gene3D - 60 98 - -
Cla08g01315 225 SMART zf_4 126 152 IPR001876 -
Cla08g01315 225 SMART zf_4 71 95 IPR001876 -
Cla08g01315 225 SUPERFAMILY Ran binding protein zinc finger-like 62 97 IPR036443 -
Cla08g01315 225 Pfam Zn-finger in Ran binding protein and others 124 153 IPR001876 -
Cla08g01315 225 Pfam Zn-finger in Ran binding protein and others 69 96 IPR001876 -
Cla08g01315 225 ProSitePatterns Zinc finger RanBP2-type signature. 73 92 IPR001876 -
Cla08g01315 225 ProSiteProfiles Zinc finger RanBP2 type profile. 124 155 IPR001876 -
Cla08g01315 225 PANTHER ZINC FINGER PROTEIN 67 184 - -
Cla08g01315 225 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 67 184 - -
Cla08g01315 225 SUPERFAMILY Ran binding protein zinc finger-like 120 155 IPR036443 -
Cla08g01315 225 ProSiteProfiles Zinc finger RanBP2 type profile. 69 98 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01315 - - - csv:101219235 232.646
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01083 Cla-Chr6:23451608 Cla08g01315 Cla-Chr8:26063486 8.25E-09 dispersed
Cla11g00261 Cla-Chr11:3034356 Cla08g01315 Cla-Chr8:26063486 9.07E-06 wgd
Cla07g01222 Cla-Chr7:29193067 Cla08g01315 Cla-Chr8:26063486 1.66E-32 wgd
Cla08g01315 Cla-Chr8:26063486 Cla09g00240 Cla-Chr9:2415965 2.69E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g452 Blo01g01377 . Bda01g00734 . . Bpe02g00572 . . Cmo05g00409 Cmo12g00277 . Cma05g00396 . Car12g00309 Sed01g1363 Cpe07g00286 . Bhi04g00986 Tan02g2707 Cmetu03g1356 . . . Lcy13g1766 . . . . . . . Cone4ag1804 Cone7ag1712 . . . . . Cme03g01640 . . . . . . . . . . . . Cma12g00327 . Car05g00333 Cpe11g00340 . . . . . . . . Cla08g01315 Cam08g1775 Cec08g1357 Cco08g1477 Clacu08g1471 . Cre08g1258 Lsi08g01180 . Chy03g01140 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001025 2 6 2 1 2 1 5 2 2 2 1 1 4 3 3 5 2 4 4 1 2 3 3 2 3 2 3 5 5 2 83