Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01330 ATGGGAGAAACAAGGGACAACGAATACGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGAGTTATCAACTTATCACGTCATAAATAGGATAGAGTTAATTGAGTGTTACTTTGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACAGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCATACCAGGTGCGTCGGTGTATCTGTCACGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCCGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATCGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATCGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTCGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTTAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACGTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACAACTTTTGTGGGTTGAATTTTTGCTCATTTAGATGTGATTTTTTAATGGGTACCTTGTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCGGCTACCCAGGTTGGTGAGGGTGGTTCACATGTCATTGTGCTACCTGTGTTCTCTTGCCTCACTGCCTATTACCGATGTTTTGATGTGGAATTTTCTGAAGCTCGAGTGTGCGGAATGGAAATATCAAGTTTTGGGAATGAGATGTTAATCTAA 1557 42.71 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIELSTYHVINRIELIECYFVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQVRRCICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYNFCGLNFCSFRCDFLMGTLCHHRCRDLQHRISATQVGEGGSHVIVLPVFSCLTAYYRCFDVEFSEARVCGMEISSFGNEMLI 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26169949 26175167 - ClCG08G013310.2 Cla08g01330 278985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01330 518 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 434 - -
Cla08g01330 518 SMART ultradead3 73 278 IPR014001 -
Cla08g01330 518 Pfam Helicase conserved C-terminal domain 288 395 IPR001650 -
Cla08g01330 518 Pfam DEAD/DEAH box helicase 80 248 IPR011545 GO:0003676|GO:0005524
Cla08g01330 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 406 IPR027417 -
Cla08g01330 518 SMART helicmild6 314 395 IPR001650 -
Cla08g01330 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 262 IPR014001 -
Cla08g01330 518 Gene3D - 271 439 IPR027417 -
Cla08g01330 518 CDD DEADc_DDX39 45 264 - -
Cla08g01330 518 MobiDBLite consensus disorder prediction 1 22 - -
Cla08g01330 518 CDD SF2_C_DEAD 275 404 - -
Cla08g01330 518 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 434 - -
Cla08g01330 518 MobiDBLite consensus disorder prediction 1 29 - -
Cla08g01330 518 Gene3D - 42 270 IPR027417 -
Cla08g01330 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 290 435 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01330 Cla-Chr8:26169949 Cla09g00073 Cla-Chr9:688045 1.43E-62 dispersed
Cla08g01330 Cla-Chr8:26169949 Cla07g01320 Cla-Chr7:30378278 2.29E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01330 K12812 - csv:101217346 794.653