Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01333 ATGGTTTTATTTATTTCGACCCTTATAAAATCTGCCCAATCTTCTACTGTGGACCGTCTGGACATTATTCGAAGGCTTCTCTCTTTCGCGGTGTTTTTCAACGTCTGCTCTTCTTCGGATAATTTAGCTTGGAGACGCGTAAATGCATTATCCAGGGAATATTTGGCTTCCGCTCTAACAGATTATAACACGAATGAGAGAAGAAGCTGTCATGGATGCTACACTGCATCTGCACTAGGTAATGCAATGGATGGGCCGTCTAAAGGTCTGAGAGTTAAAGACCAAGAAGCAAAGAAACAATGCTTACCAGAAAATTGCCCGAGCTCTAGCACATGTGAAATGGACAACAGTACAGTTTGGTCCCAGAGAAGCATGCCACCAGCCCAGTCACAAAATTCTCACAGCAATATTGGGAGCAGTACAGACTTTGTAAACTCTGGACTACTTCTTTGGAATGAGACCAGGAAGCAATGGGTTGGAAATAAAATGTCCGAGAGCCAAAAGCAAGTTCAAGAACCCAAAATAAGCTGGAATGCTACTTATGACAGCTTATTAACAACAAACAAGCCGTTCCCCGAGCCCATACCTCTTGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGTCTATATGACTGA 648 43.36 MVLFISTLIKSAQSSTVDRLDIIRRLLSFAVFFNVCSSSDNLAWRRVNALSREYLASALTDYNTNERRSCHGCYTASALGNAMDGPSKGLRVKDQEAKKQCLPENCPSSSTCEMDNSTVWSQRSMPPAQSQNSHSNIGSSTDFVNSGLLLWNETRKQWVGNKMSESQKQVQEPKISWNATYDSLLTTNKPFPEPIPLAEMIEFLVDVWEQEGLYD 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26190286 26193604 + ClCG08G013340.2 Cla08g01333 278988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01333 215 PANTHER OS07G0479600 PROTEIN 62 215 - -
Cla08g01333 215 Pfam Protein of unknown function (DUF4050) 174 215 IPR025124 -
Cla08g01333 215 Pfam Protein of unknown function (DUF4050) 111 173 IPR025124 -
Cla08g01333 215 PANTHER DUF4050 FAMILY PROTEIN 62 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01333 - - - csv:101216869 271.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01115 Cla-Chr6:23970296 Cla08g01333 Cla-Chr8:26190286 5.99E-47 dispersed
Cla08g00792 Cla-Chr8:20332739 Cla08g01333 Cla-Chr8:26190286 9.21E-24 dispersed
Cla08g01333 Cla-Chr8:26190286 Cla10g01904 Cla-Chr10:34931111 4.87E-12 dispersed
Cla11g00281 Cla-Chr11:3237205 Cla08g01333 Cla-Chr8:26190286 1.66E-20 wgd
Cla07g01208 Cla-Chr7:29070377 Cla08g01333 Cla-Chr8:26190286 1.01E-28 wgd
Cla08g01333 Cla-Chr8:26190286 Cla09g00255 Cla-Chr9:2526059 3.08E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g481 . . . . . . . . . Cmo12g00286 . . . Car12g00318 . Cpe07g00295 . Bhi04g00955 . . . Hepe10g0252 . . . . . . . . . . . Cone17ag1022 . . . . . . . . . . . . . . . . . Cma12g00337 . . . . . . . . . . . Cla08g01333 Cam08g1795 Cec08g1374 . Clacu08g1489 . . . . Chy03g01121 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012949 0 5 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 4 1 0 28