Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01334 ATGCATCTGCTCTTTTCACCTGAAAACTTGGTGATTGCCGTCTTCACCTGTATTGGGTCTCTCTTTTTTCCTCTCTTTGGAGGGTTTTTCCGTGGAGTTCTGCCCACAGTTGAATTTTTGGGTTTCGTCAACCCCTACCCATGGCTAAGATCTTTGGTTTTACTCCGATATTTTCGTAACAATACTTGCATAGTTTCATTTGACTGTGAAGTTTGTGGTGTTATTTATTGGGAGTACAGTCCCTCAAGTTGTGAACTTGGTACGATGTATCAGCTAATTTCTTTTTCTTTTGATCTTGCAGTCACAGAAAGTGAGGATTTTTTCCCTGGGGCACCAATCTATCCAAACCCCAAGGATACTAGTCCCTTTTTGTCCCTTGGTCGTCATGTGGATGTTTGTTATCCTCTCCGTAAGAGGTCCAGAGTCAGTGCCCCATTTGTGCCTAGTGGAGAAATACTCAAAAAGAAGGAGGCATCTATTGAAGTTCTTCCAGACGAGTGCCTCTTTGAGATCTTCAGATGCCTGCCTGATAGAGAGACGAGGAGCCTCTGCGCTTGCGTTTCTAAACGCTGGCTCATGCTTTTAAGCAGTATAAGTGGAAACGAATTTTACAGTGCTTCCAAAAATTTGAAGCCTAAGAATGTTGTGACTGAAAACGAGAAAGATAACCTAATTGAGAACGATGGATGTCTTTCACGAAATTTAGAAGGGAAAAAGGCAACAGATGTAAGACTAGCTGCCATAGCAGTAGGAACTGCTAGTTGTGGTGGCTTGGGCAAGTTGTCAATTCGTGGAGGCAATCATGGTTCCGACGTTACAAACCTTGGCCTTAAGGCTGTTGCGCATGGATGTCCTTCCCTTAAAGCTATTTCTTTGTGGAATCTGTCTTCAATAGGTGATGAAGGTCTGATTGAGATTGCCAAGGGATGTCAACTCCTAGAGAAGCTTGATTTATGCCATTGCCCTGGAATCTCAAACAAAGCTTTGCTGGAACTTGCCAAAAACTGCGCTAATCTGACTGCTATAACAATAGAGTCTTGTCTAAACATTGGCAATGAAAGCATTCAATCTATTGGGCAATATTGTTCGAATCTGAAGTCCCTTTCAATCAGAGACTGCCCCCTTATCGGGGATCAAGGAATAGTTAGCATGTTCACTTCCACCTCGTACACCTTAAATAAGGTGAAGCTCCAGGGTCTAAATGTCACTGATGTGTCGCTTGCTGTCATTGGCCATTATGGAAGGGCAGTTACAGACCTTATGCTTACTGGCCTGACAAATGTTTCCGAGAGGGGATTTTGGGCCATGGGCAATGGTCATGGTTTGCAAAAGTTGAGATCATTAACACTTGCTTCTTGCCATGGTGTGACTGACGTTGGGCTACAATCAATTGGAAAGGGATGTCCAAACTTGAGGAAGTTCTGCTTGCGCAAATGTTCATTTTTGTCCGACAATGGAATGGTGTCTTTTGCTCAGGCTGCTACCTCCATTGATAACTTACAATTAGAAGAGTGCCACAGGATAACCCAATTGGGTTTATTTGGTACCATCTTAAACTGTGGTGCAAAGTTAAAGGCCCTTTCTCTAGTAAACTGCTTAGGGATCAAGGATTTGAGCCTGAACTTGCCTTCTCTGTCACCTTGCAAATCTCTGCAGTCATTATCCATCCGCAATTGCCCTGGGTTTGGTAACGTAAGTTTAACTCTTCTGAGCAAGCTGTGCCCCCAGCTTCAGCATGTGGATTTATCTGGGCTCAATGGTATTACAGATTCTGGGCTTCTGCCATTGCTTACAAATTGTAAAGCAGGATTGGTGAAGGTCAATCTAAGTGGCTGTGTGAATCTAACTGACAAAGTGATTTCATCCTTGACCAAGCTTCATGGTTGGACTCTTGAATTGCTCAATCTTGATGGTTGTTTGAAGGTCACCGATTCAAGCTTGGTGGCAATTGCAGAGAACTGTCCGTTGCTCAATGATCTCGACGTCTCCAAGTGCTGTATCACTGATTTTGGGGTTGCAGCGCTTGCTCAAGCCAACCAGTTCAACCTGCAGATCCTTTCTGTGTTTGGGTGCTCTGCCTTAACCGACCAGAGCTTGCTCGCTCTTGTAAAATTGGGCGACTCCCTCTTGGGCTTGAATCTTCAGCACTGCAACTCAATCAGCACCAGAAGTATTGAGCTGCTATTGGCTCAACTCCATCGGGAATATGGTCATTCTCTCCTTTTTCACAGATCTCCCTTGAATGGGGGTCTGTTTTTAGTGTTTTGGCTCTCACATGAGATGTCTCTCACTTTGATAGATGGCCATCCTTCCCTGAGCTCCAGTTTCTGGATCAAGGGGGTAGGGGTTTATGATCGCCTAGACAAATCATCTTCCTGGTTGCTTTTAGCAGTTCCTATATTTGGTGCCTTTCCATTCACGGGGCCTCGGTCGTGGCAGCAGGCCGGGAAGACGGTCATTTCACGTCTCAACAAGCCATTCACTTCACGTTCCATTCCCAACCACCGTCTGATTACAGATGGGGAACTCATTCACAACTGGATTGTAAGGTTTTTACCTGTGGAATCTCCCAAGCCCATCCCATAA 2586 44.74 MHLLFSPENLVIAVFTCIGSLFFPLFGGFFRGVLPTVEFLGFVNPYPWLRSLVLLRYFRNNTCIVSFDCEVCGVIYWEYSPSSCELGTMYQLISFSFDLAVTESEDFFPGAPIYPNPKDTSPFLSLGRHVDVCYPLRKRSRVSAPFVPSGEILKKKEASIEVLPDECLFEIFRCLPDRETRSLCACVSKRWLMLLSSISGNEFYSASKNLKPKNVVTENEKDNLIENDGCLSRNLEGKKATDVRLAAIAVGTASCGGLGKLSIRGGNHGSDVTNLGLKAVAHGCPSLKAISLWNLSSIGDEGLIEIAKGCQLLEKLDLCHCPGISNKALLELAKNCANLTAITIESCLNIGNESIQSIGQYCSNLKSLSIRDCPLIGDQGIVSMFTSTSYTLNKVKLQGLNVTDVSLAVIGHYGRAVTDLMLTGLTNVSERGFWAMGNGHGLQKLRSLTLASCHGVTDVGLQSIGKGCPNLRKFCLRKCSFLSDNGMVSFAQAATSIDNLQLEECHRITQLGLFGTILNCGAKLKALSLVNCLGIKDLSLNLPSLSPCKSLQSLSIRNCPGFGNVSLTLLSKLCPQLQHVDLSGLNGITDSGLLPLLTNCKAGLVKVNLSGCVNLTDKVISSLTKLHGWTLELLNLDGCLKVTDSSLVAIAENCPLLNDLDVSKCCITDFGVAALAQANQFNLQILSVFGCSALTDQSLLALVKLGDSLLGLNLQHCNSISTRSIELLLAQLHREYGHSLLFHRSPLNGGLFLVFWLSHEMSLTLIDGHPSLSSSFWIKGVGVYDRLDKSSSWLLLAVPIFGAFPFTGPRSWQQAGKTVISRLNKPFTSRSIPNHRLITDGELIHNWIVRFLPVESPKPIP 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26203630 26208881 + ClCG08G013350.2 Cla08g01334 278989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01334 861 SUPERFAMILY RNI-like 257 512 - -
Cla08g01334 861 Pfam F-box-like 161 194 IPR001810 GO:0005515
Cla08g01334 861 PANTHER UNCHARACTERIZED 109 730 - -
Cla08g01334 861 SMART LRR_CC_2 310 335 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 654 678 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 574 599 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 548 573 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 362 387 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 468 493 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 680 705 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 284 309 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 601 626 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 628 653 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 336 361 IPR006553 -
Cla08g01334 861 SMART LRR_CC_2 442 467 IPR006553 -
Cla08g01334 861 Pfam Leucine Rich repeat 443 464 IPR001611 GO:0005515
Cla08g01334 861 Pfam Leucine Rich repeat 654 676 IPR001611 GO:0005515
Cla08g01334 861 Pfam Leucine Rich repeat 574 596 IPR001611 GO:0005515
Cla08g01334 861 Pfam Leucine Rich repeat 361 383 IPR001611 GO:0005515
Cla08g01334 861 SUPERFAMILY RNI-like 414 735 - -
Cla08g01334 861 PANTHER - 109 730 - -
Cla08g01334 861 SUPERFAMILY F-box domain 157 197 IPR036047 GO:0005515
Cla08g01334 861 Gene3D Ribonuclease Inhibitor 154 386 IPR032675 -
Cla08g01334 861 Gene3D Ribonuclease Inhibitor 544 680 IPR032675 -
Cla08g01334 861 Gene3D Ribonuclease Inhibitor 387 543 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01334 K14515 EBF1_2; EIN3-binding F-box protein - csv:101216639 1169.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g01740 Cla08g01334 CCT
Cla05g01740 Cla08g01334 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01116 Cla-Chr6:24006582 Cla08g01334 Cla-Chr8:26203630 0 dispersed
Cla08g01334 Cla-Chr8:26203630 Cla03g01644 Cla-Chr3:32333112 3.43E-20 dispersed
Cla01g02209 Cla-Chr1:36045774 Cla08g01334 Cla-Chr8:26203630 9.78E-09 transposed
Cla02g00399 Cla-Chr2:3864321 Cla08g01334 Cla-Chr8:26203630 2.17E-08 transposed
Cla02g00783 Cla-Chr2:9976672 Cla08g01334 Cla-Chr8:26203630 1.30E-08 transposed
Cla02g01874 Cla-Chr2:33919575 Cla08g01334 Cla-Chr8:26203630 9.77E-14 transposed
Cla03g01452 Cla-Chr3:30083240 Cla08g01334 Cla-Chr8:26203630 7.45E-12 transposed
Cla05g01626 Cla-Chr5:27630305 Cla08g01334 Cla-Chr8:26203630 1.49E-06 transposed
Cla06g00531 Cla-Chr6:6398541 Cla08g01334 Cla-Chr8:26203630 3.57E-23 transposed
Cla07g00256 Cla-Chr7:2831907 Cla08g01334 Cla-Chr8:26203630 6.86E-06 transposed
Cla07g00375 Cla-Chr7:4502902 Cla08g01334 Cla-Chr8:26203630 2.29E-08 transposed
Cla08g00651 Cla-Chr8:18717876 Cla08g01334 Cla-Chr8:26203630 2.03E-08 transposed
Cla10g02124 Cla-Chr10:36906418 Cla08g01334 Cla-Chr8:26203630 5.91E-20 transposed
Cla11g00282 Cla-Chr11:3251337 Cla08g01334 Cla-Chr8:26203630 0 wgd
Cla05g01740 Cla-Chr5:29218923 Cla08g01334 Cla-Chr8:26203630 0 wgd
Cla08g01334 Cla-Chr8:26203630 Cla09g00277 Cla-Chr9:2713234 3.56E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28