Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01335 ATGACTTCCACCTTCTTCAACCCTGCGCCGCCGTGCATCGCCGCTGTTGTTTCTTCTTCGTTTCTCAGATTCAAGTTCATACCGAAATTTCCCGCCGTCATACCAGTATCGTCTCTTTCGACGGTCCCGCTTCGCGCCAAAACTACCGTTAACTGTTCTCTTCCCGCCCATGGCGATGCTTCTGTTCAGACTGATTTCTGCTTCCTGAAGAGGAGGGAATTTGTCTTTTCCGCCGCGCTGCCATTTCTTCTTAGTTTGCATGAATCCGTGGAAGGTTTTAAAGCTGAGGCTGGAGAAAGGTTGGATAAAAGGGAAGTTGAACGGATTAGAGAAGAAGTAAGAAAGGTGGTAACCAAAGGCAGGGCTCCTGGTCTGCTTCGTCTGGTATTTCACGATGCTGGAACTTTTGAAACTAATGATACTTCAGGTGGTATGAATGGATCTATCATTCACGAACTTGATAGACCCGAAAACAGAGGTCTCAAGAAATCAGTTAAGATTCTTGAGGAAGCAAAGAGTACACTGAATTTAATTAGACCAGTATCTTGGGCAGACGTGATAGCAGTGGCTGGCGCTGAAGCAGTTTCAATATGTGGAGGTCCGAGTATCGCTGTTGAGTTGGGTAGATTAGACTCAGAGAAGCCAGATCCAGAAGGTAAACTTCCTGAAGAATCTCTGGATGCTGTTGGATTGAAGCAAATCTTCAGCAGAAAAGGATTCGCGACACGAGAACTAGTTGCTCTATCTGGAGCCCATACTATTGGTGGCAAAGGTTTTGGAAGCCCTGTTGTTTTTGATAATGCATATTTCAAAATCCTTTTGGAGAAGCCATGGTCGTCTAACGGTGGTATGTCCAGTATGATAGGGCTGCCTTCTGATCGTGCTCTTGCTGACGATGATGAATGCTTAAGATGGATCAAAGAGTATGCCAACGATCAGAATGTGTTCTTCGAAGATTTCCAAAATGCTTATACCAAGTTAGTAAATTCTGGTGCAAAGTGGAAAAGCTAG 1011 44.91 MTSTFFNPAPPCIAAVVSSSFLRFKFIPKFPAVIPVSSLSTVPLRAKTTVNCSLPAHGDASVQTDFCFLKRREFVFSAALPFLLSLHESVEGFKAEAGERLDKREVERIREEVRKVVTKGRAPGLLRLVFHDAGTFETNDTSGGMNGSIIHELDRPENRGLKKSVKILEEAKSTLNLIRPVSWADVIAVAGAEAVSICGGPSIAVELGRLDSEKPDPEGKLPEESLDAVGLKQIFSRKGFATRELVALSGAHTIGGKGFGSPVVFDNAYFKILLEKPWSSNGGMSSMIGLPSDRALADDDECLRWIKEYANDQNVFFEDFQNAYTKLVNSGAKWKS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26209263 26212771 - ClCG08G013360.2 Cla08g01335 278990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01335 336 Gene3D Peroxidase, domain 2 222 324 - -
Cla08g01335 336 PRINTS Plant ascorbate peroxidase signature 308 332 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Plant ascorbate peroxidase signature 102 122 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Plant ascorbate peroxidase signature 238 259 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Plant ascorbate peroxidase signature 220 237 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Plant ascorbate peroxidase signature 140 150 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Plant ascorbate peroxidase signature 180 198 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Plant ascorbate peroxidase signature 199 211 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 ProSitePatterns Peroxidases active site signature. 122 133 IPR019794 GO:0004601
Cla08g01335 336 PRINTS Haem peroxidase superfamily signature 199 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Haem peroxidase superfamily signature 122 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Haem peroxidase superfamily signature 181 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 40 335 IPR044831 GO:0004601|GO:0034599
Cla08g01335 336 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 40 335 - -
Cla08g01335 336 ProSiteProfiles Plant heme peroxidase family profile. 122 336 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 244 254 IPR019793 -
Cla08g01335 336 SUPERFAMILY Heme-dependent peroxidases 115 333 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla08g01335 336 Gene3D - 110 331 - -
Cla08g01335 336 Pfam Peroxidase 110 312 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01335 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216396 604.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01335 Cla-Chr8:26209263 Cla03g00195 Cla-Chr3:2172289 1.65E-35 dispersed
Cla08g01335 Cla-Chr8:26209263 Cla02g00433 Cla-Chr2:4231990 1.25E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37