Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01353 ATGGAAAAAGTGATGCCGATGTTACGTGGCAGTGGCAGAGATAAAAGGATTCCTCCCAATCTCCGCCCTTACAAAGAAAGAGGGAACCGAACTGCCGTTTTACAATTGGCAGTTTACCGAGCTCTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCGCCGACCACTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCCACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGGGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCGCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTTGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGACGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGTGAGTATGCTGGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGAAGTAATGCAGGTGAAGCAACTAGCAACGACCATCCATAG 1524 49.02 MEKVMPMLRGSGRDKRIPPNLRPYKERGNRTAVLQLAVYRALSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLADHSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHPSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTVSMLEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRSNAGEATSNDHP 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26339395 26345087 - ClCG08G013550.2 Cla08g01353 279008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01353 507 Pfam KNOX2 domain 287 336 IPR005541 GO:0003677|GO:0005634
Cla08g01353 507 ProSiteProfiles 'Homeobox' domain profile. 414 481 IPR001356 GO:0003677
Cla08g01353 507 MobiDBLite consensus disorder prediction 75 95 - -
Cla08g01353 507 Pfam KNOX1 domain 229 268 IPR005540 GO:0003677|GO:0005634
Cla08g01353 507 MobiDBLite consensus disorder prediction 182 218 - -
Cla08g01353 507 ProSiteProfiles ELK domain profile. 394 414 IPR005539 GO:0003677
Cla08g01353 507 MobiDBLite consensus disorder prediction 478 492 - -
Cla08g01353 507 Pfam ELK domain 394 415 IPR005539 GO:0003677
Cla08g01353 507 CDD homeodomain 417 482 IPR001356 GO:0003677
Cla08g01353 507 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 497 - -
Cla08g01353 507 SUPERFAMILY Homeodomain-like 416 484 IPR009057 -
Cla08g01353 507 MobiDBLite consensus disorder prediction 1 28 - -
Cla08g01353 507 MobiDBLite consensus disorder prediction 1 23 - -
Cla08g01353 507 Gene3D - 415 480 - -
Cla08g01353 507 SMART ELK_2 394 415 IPR005539 GO:0003677
Cla08g01353 507 MobiDBLite consensus disorder prediction 478 507 - -
Cla08g01353 507 MobiDBLite consensus disorder prediction 493 507 - -
Cla08g01353 507 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 83 497 - -
Cla08g01353 507 SMART KNOX1_2 226 270 IPR005540 GO:0003677|GO:0005634
Cla08g01353 507 MobiDBLite consensus disorder prediction 182 197 - -
Cla08g01353 507 Pfam Homeobox KN domain 434 477 IPR008422 GO:0003677|GO:0006355
Cla08g01353 507 SMART KNOX2_2 282 337 IPR005541 GO:0003677|GO:0005634
Cla08g01353 507 SMART HOX_1 416 485 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00313 Cla-Chr1:3311245 Cla08g01353 Cla-Chr8:26339395 5.40E-121 dispersed
Cla08g01353 Cla-Chr8:26339395 Cla08g01650 Cla-Chr8:29144261 2.00E-20 dispersed
Cla05g01707 Cla-Chr5:28846938 Cla08g01353 Cla-Chr8:26339395 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01353 - - csv:101213817 827.394