Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01353 | ATGGAAAAAGTGATGCCGATGTTACGTGGCAGTGGCAGAGATAAAAGGATTCCTCCCAATCTCCGCCCTTACAAAGAAAGAGGGAACCGAACTGCCGTTTTACAATTGGCAGTTTACCGAGCTCTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCGCCGACCACTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCCACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGGGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCGCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTTGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGACGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGTGAGTATGCTGGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGAAGTAATGCAGGTGAAGCAACTAGCAACGACCATCCATAG | 1524 | 49.02 | MEKVMPMLRGSGRDKRIPPNLRPYKERGNRTAVLQLAVYRALSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLADHSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHPSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTVSMLEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRSNAGEATSNDHP | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26339395 | 26345087 | - | ClCG08G013550.2 | Cla08g01353 | 279008 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01353 | 507 | Pfam | KNOX2 domain | 287 | 336 | IPR005541 | GO:0003677|GO:0005634 | |
Cla08g01353 | 507 | ProSiteProfiles | 'Homeobox' domain profile. | 414 | 481 | IPR001356 | GO:0003677 | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 75 | 95 | - | - | |
Cla08g01353 | 507 | Pfam | KNOX1 domain | 229 | 268 | IPR005540 | GO:0003677|GO:0005634 | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 182 | 218 | - | - | |
Cla08g01353 | 507 | ProSiteProfiles | ELK domain profile. | 394 | 414 | IPR005539 | GO:0003677 | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 478 | 492 | - | - | |
Cla08g01353 | 507 | Pfam | ELK domain | 394 | 415 | IPR005539 | GO:0003677 | |
Cla08g01353 | 507 | CDD | homeodomain | 417 | 482 | IPR001356 | GO:0003677 | |
Cla08g01353 | 507 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 83 | 497 | - | - | |
Cla08g01353 | 507 | SUPERFAMILY | Homeodomain-like | 416 | 484 | IPR009057 | - | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cla08g01353 | 507 | Gene3D | - | 415 | 480 | - | - | |
Cla08g01353 | 507 | SMART | ELK_2 | 394 | 415 | IPR005539 | GO:0003677 | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 478 | 507 | - | - | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 493 | 507 | - | - | |
Cla08g01353 | 507 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 83 | 497 | - | - | |
Cla08g01353 | 507 | SMART | KNOX1_2 | 226 | 270 | IPR005540 | GO:0003677|GO:0005634 | |
Cla08g01353 | 507 | MobiDBLite | consensus disorder prediction | 182 | 197 | - | - | |
Cla08g01353 | 507 | Pfam | Homeobox KN domain | 434 | 477 | IPR008422 | GO:0003677|GO:0006355 | |
Cla08g01353 | 507 | SMART | KNOX2_2 | 282 | 337 | IPR005541 | GO:0003677|GO:0005634 | |
Cla08g01353 | 507 | SMART | HOX_1 | 416 | 485 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00313 | Cla-Chr1:3311245 | Cla08g01353 | Cla-Chr8:26339395 | 5.40E-121 | dispersed | |
Cla08g01353 | Cla-Chr8:26339395 | Cla08g01650 | Cla-Chr8:29144261 | 2.00E-20 | dispersed | |
Cla05g01707 | Cla-Chr5:28846938 | Cla08g01353 | Cla-Chr8:26339395 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01353 | - | - | csv:101213817 | 827.394 |