Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01357 CCACCAGTGGGACCCCTCTTCTCTAATTACCAAAATTGCTTGACAGTTCAGTATTTGGAAAATTGCTCTCAATTTGTCACCATTTTTGTCTACAAAAACCCCCCTCTTTTCCCACTCCCACACTTCAATTTACAATCACAACACCATCAACTTCTCCTCTTCACCATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATACGCCATCCCTTATTGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACGAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTGGCATCCGGCATTGCTCCGGTCCAGCGAGTGGAAGCGGATACAACGACGGCGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGAAGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGCATTTTCACAAACACCTTTCGCTCACTTAAAAAAAAGAAAAAAAAGAAAAGAAAAAGAAAAGAAAAAAGAAAAAACGAATACCCACCAAATATTTTCTTCGGGACTAGCTATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGTGCCGACGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGCGCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATCGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTACCACCGTCTCCGGCGTTTTGA 1293 47.25 PPVGPLFSNYQNCLTVQYLENCSQFVTIFVYKNPPLFPLPHFNLQSQHHQLLLFTMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDFSVASGIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDEDHIQQMIEELLDYGGIELRSASVAFSQTPFAHLKKRKKRKEKEKKKEKTNTHQIFSSGLAMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26394613 26402746 + ClCG08G013610.1 Cla08g01357 279012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01357 430 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Cla08g01357 430 Gene3D AP2/ERF domain 272 332 IPR036955 GO:0003700|GO:0006355
Cla08g01357 430 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Cla08g01357 430 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 267 371 - -
Cla08g01357 430 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 387 423 - -
Cla08g01357 430 SMART rav1_2 273 336 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 CDD AP2 61 121 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 Pfam AP2 domain 273 322 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 PRINTS Ethylene responsive element binding protein signature 296 312 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 PRINTS Ethylene responsive element binding protein signature 274 285 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 CDD AP2 272 330 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 Coils Coil 236 256 - -
Cla08g01357 430 ProSiteProfiles AP2/ERF domain profile. 273 330 IPR001471 GO:0003700|GO:0006355
Cla08g01357 430 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 56 228 - -
Cla08g01357 430 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 267 371 - -
Cla08g01357 430 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 56 228 - -
Cla08g01357 430 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 387 423 - -
Cla08g01357 430 SUPERFAMILY DNA-binding domain 273 331 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01210 Cla-Chr7:29109838 Cla08g01357 Cla-Chr8:26394613 3.26E-30 dispersed
Cla08g00099 Cla-Chr8:2020262 Cla08g01357 Cla-Chr8:26394613 1.46E-36 dispersed
Cla08g01357 Cla-Chr8:26394613 Cla11g00279 Cla-Chr11:3216107 3.88E-30 dispersed
Cla05g01700 Cla-Chr5:28752470 Cla08g01357 Cla-Chr8:26394613 1.11E-59 wgd
Cla07g01182 Cla-Chr7:28806666 Cla08g01357 Cla-Chr8:26394613 1.60E-41 wgd
Cla08g01357 Cla-Chr8:26394613 Cla09g00288 Cla-Chr9:2794654 1.92E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61592 PF00847 AP2 4.60E-11 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01357 - - csv:101212705 291.967