Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01372 ATGAGTTCGTTTTCCATCACTCGGAAGAAGACTCCTTTCCAAAAACACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGAGGATGAAACTGCTCGATTGTATGCGGAATTTGTGGAGTCATTTCAAGGAGATAATGCACCTGGGTCTAAGACTTTTGTTCGTGGAGGAACTATCAACCCTAACGAGAAATTGAAGAGTGAATCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAGTCTGACAAGAAGGAGCTGGAAAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGCTGAGGGAAAGACGAAATCAAGATCGTGAACATTGGCGTGACGGGCGCCATGGAGAAATCTCAACACCATCTAGTCGATTTGATGAACTGCCTGATGACTTTGATCCTAGTGGAAAGTTCCCCGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTTGGAAATTTATCTCCACAGGTTGATGAGAATTTTCTCCTACGAACTTTTGGGAGATTTGGACCAATTGCTAGTGTAAAGATAATGTGGCCAAGGACAGAGGAGGAACGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAGGGAGTTGTTGTTTACGGGTATGAGCTGAAAATTGGATGGGGAAAGTCTGTTGCTCTTCCATCCCAAGCATTACCTGCACCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGTTCATCAGGTCCGCCGGTCACCTCTGTCCCAAATCAAAATTCTGAACTGGTTCTGACACCCAACATTCCTGATATTACTGTTGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTATGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATCATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTTTGGCGACTTTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACGGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTTGAGAAGGAGTCTGGTCCCACTTATGCTGCTGGAAGAAGCAGACGCGTGGAGCTTGAAAGAACATTAACTGATTCACAAAGGGATGAATTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCAAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATACCGCACCAAATTTGAAGCAACATTACCTGACATCATTGAGAGCTTCAATGATCTATATCGCAGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTATTAAAATTATTGCAAGTATGGTCCGATTGGTTTCTGTTTTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTCCTTCGGTTGGGAAACTCTGGTGTGATCCCTTTTCATTCGTTATGTGGTGATGCCCCTGAGATTGAACGGAAGGCCAATTGTGATGATTTAGGAGATGGGAGTAAAATCAATCAAGATGCTGAATTGGCAATGGGAAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGAAGGTGCAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAGCTTGATGAAGACTTAAAATATAGTAATTCTCATTCTGGAAGATATTCAAGTAGCTCAAGAGAGACTAAAGTTGAACGAGATCCAGCAGAAATTTCTGGTTGGAACCGTTTTGGGGATGACGAGCCAGATTTCCAAAGGATGGGTTCTGTGCCTATGGCTCAAACTCTTTCCATTCCACAGCCTGAACTAAAAGGCTTCACAAAGTCTGGGAAAAATGACCCTGTTTTGCCTGCCTCTAAATGGGCTAGGGAGGATGATGAAAGCGACAATGAGCAAAAAGGAGGTAGTAGGGGTCTCGGTTTAAGTTATTCATCTTCTGGAAGTGAAAATGCAGGTGATGGTCCTAGTAAAGCTGATGAGATGGAGATTACTACGGAGGCAAGTGTCCTTATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGACGTGTAGAGGTGGCTTTGATTGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGCAGAGGAAATAGAGAGGAGAGTTTTGATATATCGGAAACAACTAGAATCTGAATATGGACTGTCAGATTCCAATGAGACTGCTTCAAGGAAGAAGAGGAGGGATAGATCGGATGATGGCCATGATTCATCAAGGAAGCTGCAGCGTGGCCAGAGCCATAGTGATAGTCCAGTACGAAAGTCATCGAACCGAGACAGAGACAGGGAAAATGACGTGGACAGGGAGCGAGAAAGATCACGAGACAGGGACCGGGAAAAGAGTGGAAGCAGAGAAAGGGATGATCACGAACGAGATAGAGGTAAAGAAAGAGATAGGGATAGGAGAAAACGTGGAAAATAA 2877 44.14 MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSESEGEKSKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELEKPKEKEKGKSRNIDHFMEELKHEQELRERRNQDREHWRDGRHGEISTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEEDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANCDDLGDGSKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSHSGRYSSSSRETKVERDPAEISGWNRFGDDEPDFQRMGSVPMAQTLSIPQPELKGFTKSGKNDPVLPASKWAREDDESDNEQKGGSRGLGLSYSSSGSENAGDGPSKADEMEITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSAEEIERRVLIYRKQLESEYGLSDSNETASRKKRRDRSDDGHDSSRKLQRGQSHSDSPVRKSSNRDRDRENDVDRERERSRDRDREKSGSRERDDHERDRGKERDRDRRKRGK 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26593268 26608430 + ClCG08G013750.1 Cla08g01372 279027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01372 958 MobiDBLite consensus disorder prediction 758 773 - -
Cla08g01372 958 SUPERFAMILY RNA-binding domain, RBD 179 277 IPR035979 GO:0003676
Cla08g01372 958 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Cla08g01372 958 Gene3D - 817 868 - -
Cla08g01372 958 MobiDBLite consensus disorder prediction 1 165 - -
Cla08g01372 958 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Cla08g01372 958 MobiDBLite consensus disorder prediction 684 727 - -
Cla08g01372 958 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Cla08g01372 958 SMART cwf21_2 817 866 IPR013170 -
Cla08g01372 958 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Cla08g01372 958 MobiDBLite consensus disorder prediction 99 165 - -
Cla08g01372 958 Gene3D - 444 588 IPR008942 -
Cla08g01372 958 Gene3D - 97 269 IPR012677 -
Cla08g01372 958 Coils Coil 818 838 - -
Cla08g01372 958 MobiDBLite consensus disorder prediction 858 958 - -
Cla08g01372 958 MobiDBLite consensus disorder prediction 775 792 - -
Cla08g01372 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 261 IPR000504 GO:0003723
Cla08g01372 958 MobiDBLite consensus disorder prediction 698 723 - -
Cla08g01372 958 Coils Coil 17 37 - -
Cla08g01372 958 SUPERFAMILY ENTH/VHS domain 445 584 IPR008942 -
Cla08g01372 958 PANTHER RNA PROCESSING PROTEIN LD23810P 5 953 - -
Cla08g01372 958 MobiDBLite consensus disorder prediction 742 823 - -
Cla08g01372 958 MobiDBLite consensus disorder prediction 65 80 - -
Cla08g01372 958 MobiDBLite consensus disorder prediction 871 951 - -
Cla08g01372 958 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Cla08g01372 958 Pfam cwf21 domain 818 864 IPR013170 -
Cla08g01372 958 SMART rrm1_1 187 263 IPR000504 GO:0003723
Cla08g01372 958 PANTHER - 5 953 - -
Cla08g01372 958 MobiDBLite consensus disorder prediction 11 35 - -
Cla08g01372 958 CDD RRM_SR140 185 268 IPR035009 -
Cla08g01372 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Cla08g01372 958 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Cla08g01372 958 SMART 558neu5 450 585 IPR006569 -
Cla08g01372 958 Coils Coil 448 468 - -
Cla08g01372 958 Pfam CID domain 450 578 IPR006569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01372 K12842 SR140; U2-associated protein SR140 - csv:101209274 1676.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01372 Cla-Chr8:26593268 Cla01g00399 Cla-Chr1:4386973 2.08E-08 dispersed
Cla08g01372 Cla-Chr8:26593268 Cla09g01707 Cla-Chr9:34204193 1.68E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40