Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01373 ATGACGGCAGCCGAACTGGGTGCTGAAATCCCTTGTTGTCTCAGAACTGTTTCGTTGCTTAGACTGATGGTGGAGGAAGAGAAGCTTAAAGTCTCTGTTGAAGATTTGGAAGAAGATGAGCCCCAGGAAGAGTCTGGTGTCTCCATTGGGACGGCTCTTTATTGGTTCAAATTACTTGTTTCTGAAATGCATTGGAGTTTTGTGTTTGGAGTAGTGATTGTTTATGGAATTAGTCAAGGATTGGGTGGAGCGCTTAACCGTGTCTCCACCAAGTACTATATGAAGGATGTTCAGAAAGTGCAGCCATCTGAAGCACAGGTTTATTCGGGCATTACCTCAATTCCATGGATGGTTAAGCCTATCTGGGGTCTTTTCACTGATTTAGTCCCCATTCTTGGATACCATAGGCGGCCTTACTTTGTTTTTGCAGGTCTTCTTGGTGTGATCTCCTTGCTTTCATTAGCCTTACATGAGAAGCTGCATCTTCTACTCGCGATTTTGTTGTTAACAGCGGGAAGTGCCAGTGTAGCCATAGCAGATGTCACCATAGATGCATGTGTAGCACAGAACAGTAACATTCATCCTACCCTTGCAGCTGATTTGCAAAGCTTGTGCGCCTTGAGTTCTTCAGTTGGAGCATTACTCGGATTCTCTATTAGTGGTATCCTTGTTCACCTAATAGGCTCTAAGGGAGTGTATGGTTTGTTAGCAATACCTGGGGGGCTTGTGTTTTTGGTTGGAATTCTACTTAATGAACCCCATATGCCAGACTTCAATTATAGACAGGTAAACGAAAAGTTTGTCAGTGCTGGGAAGGCTATGTGGACCACGTTAAAGATCCCGAATGTCTGGAGGCCATGCCTATATATGTATCTATCTCTTGCATTATGCCTTGACATCAACGAGGGACTGTTTTATTGGTACACAGACTCAAAAAATGGTCCAAAGTTCACTCAGGAAAATGTTGGTTTCATTTTCTCAATTGGTTCAGTTGGGTCCCTTTTAGGAGCCTTACTGTATCAGTATGTTCTCAAGGACCATCAGTTCCGAGACTTGCTTTTCTGGACTCAATTGATATTCAGTTTATCTGGGATGCTAGATTTCTTGCTGGTTTTGCGTTTGAACTTGAAATTTGGACTCCCAGATTACTTCTTCATTGTGATAGATGAGGGTGTACATCAGCTTGTTAACAGGCTAAAATGGATGCCTCTTCTAGTCCTCAGCTCTAAGCTTTGCCCAAGAGGCATTGAAGGCACTTTCTTCGCTTTGCTTATGTCGATCGACAACGTTGGACTTCTCTCAGCATCATGGGGAGGCGGTTTCTTGCTCCATATCCTTAAAGTTACTCGAACAAAGTTCGATAATTTATGGCTAGCCATTTTGATTAGGAACTTGCTGAGACTCACTCCTCTCTTCATGCTGTTTTTGGTGCCCAGAGGTGATCCAAATTCTTCAATTCTTCTAACCGAGCTGCCGAGCTCAGAAGTCGATAACGAGACTTCTGAAGAAGCCGATAACATCGAACTGGTTTCCCTTGTGAATGGCATGAACATAGATAACCAGAAAGAAGCTTTCTGA 1578 43.35 MTAAELGAEIPCCLRTVSLLRLMVEEEKLKVSVEDLEEDEPQEESGVSIGTALYWFKLLVSEMHWSFVFGVVIVYGISQGLGGALNRVSTKYYMKDVQKVQPSEAQVYSGITSIPWMVKPIWGLFTDLVPILGYHRRPYFVFAGLLGVISLLSLALHEKLHLLLAILLLTAGSASVAIADVTIDACVAQNSNIHPTLAADLQSLCALSSSVGALLGFSISGILVHLIGSKGVYGLLAIPGGLVFLVGILLNEPHMPDFNYRQVNEKFVSAGKAMWTTLKIPNVWRPCLYMYLSLALCLDINEGLFYWYTDSKNGPKFTQENVGFIFSIGSVGSLLGALLYQYVLKDHQFRDLLFWTQLIFSLSGMLDFLLVLRLNLKFGLPDYFFIVIDEGVHQLVNRLKWMPLLVLSSKLCPRGIEGTFFALLMSIDNVGLLSASWGGGFLLHILKVTRTKFDNLWLAILIRNLLRLTPLFMLFLVPRGDPNSSILLTELPSSEVDNETSEEADNIELVSLVNGMNIDNQKEAF 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26610355 26614149 - ClCG08G013760.1 Cla08g01373 279028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01373 525 Coils Coil 19 39 - -
Cla08g01373 525 TIGRFAM fbt: folate/biopterin transporter 55 481 IPR004324 GO:0016021
Cla08g01373 525 Gene3D MFS general substrate transporter like domains 68 465 IPR036259 -
Cla08g01373 525 PANTHER FOLATE-BIOPTERIN TRANSPORTER 2-RELATED 35 517 - -
Cla08g01373 525 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 35 517 IPR039309 -
Cla08g01373 525 CDD MFS_FBT 70 475 - -
Cla08g01373 525 Pfam BT1 family 79 246 IPR039309 -
Cla08g01373 525 Pfam BT1 family 286 481 IPR039309 -
Cla08g01373 525 SUPERFAMILY MFS general substrate transporter 68 475 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01373 - - - csv:101209519 916.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00399 Cla-Chr5:3620944 Cla08g01373 Cla-Chr8:26610355 5.32E-23 dispersed
Cla05g00533 Cla-Chr5:4905569 Cla08g01373 Cla-Chr8:26610355 3.51E-61 dispersed
Cla06g00593 Cla-Chr6:7221203 Cla08g01373 Cla-Chr8:26610355 2.73E-59 dispersed
Cla08g01370 Cla-Chr8:26576947 Cla08g01373 Cla-Chr8:26610355 1.79E-141 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g596 . . . . Bpe02g01267 . . . Cmo05g00347 Cmo12g00322 . Cma05g00343 . Car12g00352 Sed03g1651 Cpe07g00327 . Bhi04g00059 Tan02g2774 Cmetu03g2123 . Hepe10g0210 . Lcy13g1840 . . . . . . . . . . . . . . Cme03g01568 . . Bda01g01018 . . . Bma01g01261 . . . . . Cma12g00369 . Car05g00289 Cpe11g00289 . . . . . . . . Cla08g01373 Cam08g1842 Cec08g1420 Cco08g1553 Clacu08g1537 . Cre08g1320 Lsi08g01256 . Chy03g01078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004718 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 2 1 1 2 41