Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01375 ATGGAGCTTACACCTCAGCAACTATTGGCCTACAATGGCACCGACCGATCAAAGCCAATCTATGTGGCTTTGAAGGGCCGTATTTACGACGTAACAACAGGGGCTTTTTTATACGGCCCCGGTGGTCCATACGCCATTTTCGCCGGCAAGGACGCGAGCAGAGCTCTGGCCAAGATGACCAAGAACGAGGCGGACGTCACCTCTTCCCTTACCGGCCTCTCCGAGAAAGAAATCGCTGCTCTCAACAACTGGGAGAAGAAATTTCAAGCTAAGTACCCTATTGTTGGCCGTGTTGTTTAA 300 51.33 MELTPQQLLAYNGTDRSKPIYVALKGRIYDVTTGAFLYGPGGPYAIFAGKDASRALAKMTKNEADVTSSLTGLSEKEIAALNNWEKKFQAKYPIVGRVV 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26622967 26623266 - ClCG08G013780.1 Cla08g01375 279030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01375 99 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 2 99 IPR036400 -
Cla08g01375 99 PANTHER CALCUTTA CUP-RELATED 2 99 - -
Cla08g01375 99 SMART Cyt_b5_2 3 99 IPR001199 -
Cla08g01375 99 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 2 99 - -
Cla08g01375 99 Pfam Cytochrome b5-like Heme/Steroid binding domain 4 98 IPR001199 -
Cla08g01375 99 Gene3D - 1 99 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01375 K17278 PGRMC1_2; membrane-associated progesterone receptor component - csv:101210009 161.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01375 Cla-Chr8:26622967 Cla09g01259 Cla-Chr9:17723736 1.20E-32 dispersed
Cla08g01374 Cla-Chr8:26620609 Cla08g01375 Cla-Chr8:26622967 3.18E-58 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g598 . . Bda01g00658 . . Bpe02g00531 . Bma01g02176 Cmo05g00346 . . Cma05g00342 . . Sed11g1134 . . Bhi04g00061 Tan02g2775 Cmetu03g1614 . . . Lcy13g1841 . . . . . . . Cone1ag1152 Cone5ag0861 Cone14ag0095 Cone15ag0101 . . . Cme03g01566 . . . . . . . . . . . . . . Car05g00288 Cpe11g00288 . . . . . . . . Cla08g01375 Cam08g1844 Cec08g1422 Cco08g1555 Clacu08g1539 . Cre08g1322 Lsi08g01257 . Chy03g01077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005082 1 2 0 1 1 2 1 2 2 1 2 2 1 1 2 1 2 2 1 2 2 1 1 0 1 1 1 2 1 1 40