Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01377 ATGGCGTGGGCAATGGCGAGCGACGAAGAGAGAGCTCTAGAGCAGCAGCTGGAGGTTCAATTACACGAGCAGAGAGAGTCTCTCGCCGCCTTACAAGATGCCCTAGCCTCCGACGCCTCCAATCCGGAGCTTCTCGAGTTATATGATTTTAGAAGTTTCGGAGACCTCTGGCCGTTGATTTTTCTGAATTTAATCTGTTTGAATGTTAAGGTTCATGAGGAGCTTGTCCAAGCAATTAAAGATGCTGAGGAAGGGTTGCTTCACCTTAAGCGTTCTAGGTTATTACGAGAAGCAGATTCGGTGTTGCGTGGTCGTGATAGTAACGCAACGGAGGATGTTAAGGTGGAGCCTCTTGATCCTACGGATGTCGAAGCTGAACCACTTAAGGATCAGAGTTTCATCGTCGGATCGAAATGCAGATTCCGGCACACTGATGGACGTTGGTATGACGGTGAAATTGTTGGATTGGATGGTTCTAATTCTGCGAAAATTTCTTTCCTCACTCCTACAACTGAAAATATGTTGGTAAGCATTCTGGGACGCTATATGTCGGCTTTTGCGAAACTTGACTTGGATTTTGATTCCCCTAAAATTTTGAGCAATCTCTATGGTTTTTCTCACATCATGATACTAATGCTACATAACACCACCAAAGTGCAGATATGCAAGTTCTTCTTACAGCAAAGATGTCGGTTTGGCACTAACTGCCGCTTATCGCATGGAGTTGATATCCCTTTAACCTCTCTTAGGAGATATGTGCCAACAATTTGGAATCAGTCACTGGCAGGGTCCAGTATCTGGGCTCTCTCGTCTAGGAATGACATTTGGAAGCATGCTGAATTGGAATCTTGGGATGATGCACTTCAAGTTGCACAGGTTGTTTTTAGAGGTGATGGATCCTCTCAAAAGCTTGGACCAGAGGACATAGCGCTATCTGAGTATGCTCAAATTAATGATGAAGAGGAAAGTGATTCCAGCCTGGAACAATCTGACTCAAGTGATTATGAAGAGGATGATCTGCAAGGTTTGGGATTTCTCGAGAGCTCCCAGCAGAGGGGCATCCAGAAAGAGACCACCATATTTGCTAAATGGGAGAACCATACCCGAGGGATTGCTTCCAAGATGATGGCTAATATGGGCTATCGCGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTGTCCCTGTCAAAGTTCTTCCAGCAAAACAATCTCTTGATCATGCTCTAGAGTCACAAAAGGAGAATAATACTAATGACAAGAATAATGGTAAGAAAAGAAGTAGAGGCGGTAAGAGGAAACGTGAGAAGAAGTTTGCTGCAGCGACACGTGCAGCTAAAGAGGAAGAAGAGTCAAGACCTGATGTCTTTAATCTTATCAACAATCACCTAGCAATGCATAATGGAGCATTGAATGATGGATCCGTGAAGAAACTGAAAGATAAAGGTTCTGCAGATGGGAAGAAGGTGGATAGACGAACCCTAATTGCGTATGATGATGAGGTGAAAGACTTGCGAATACGAATAGAGAAGCTTGAAGAAATGGTGAGCAGAAACAAGAAAGAGAAGGTTGTTTACGAGGCTGCCTTAAGAAAGCTCAATGAGACCCGGAAAGCTTTGGCCATGGCTGAGGCAGCTCACGCATCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAGATGGTTGAAGTATAATCCACGGAATGGAATTCAGAATCGTCTCTTCGGGCGAGGAAGAAGAAGAAGCAGCAACATGAGGATCGCAGTGGAAGGTTGCATGCACGGTGACCTCGACAATGTCTACAGAACTCTCCAATACATGGAGCAAGTTCAGAACATCAAAATCGACCTTCTGCTCTGCTGTGGCGACTTTCAGGCTGTTAGGAATGAGAACGATCTGAAGAGCTTAAATGTGCCGCCCAAATATCGGTCTATGAACTCGTTCTGGAAGTATTACTCTGGAGCTGAAGTCGCTCCCTATCCTACTATTTTCATTGGTGGAAATCATGAAGCGTCTAATTATCTGTGGGAATTGTACTATGGAGGTTGGGCTGCGCCTAATATATACTTCTTGGGCGTTGCTGGTGTAGTCAAGTTTGGAAATATCCGTATTGGTGGGCTATCTGGGATTTATAATGCACGCCATTATCATTTAGGTCACTATGAGAGGCCTCCATACAATGAGAATACTATAAGATCTATTTACCATGTTCGCGAATATGATGTTCAGAAGCTTATGCAAGTTGAGGAACCCATTGACATTTTTCTTTCTCATGATTGGCCACTTGGCATCACTGATTATGGAAACTGGAAGCAACTTGTTAGGTTTAAACCATTTTTCGAGAAGGAGTCAGAAGCAATGAAGCGGATCCAGAAAGCTAGTATAAATTCTAATTCCTGCGTGGCTTCAACTTCAACTTTAGGTTATGAAGAAAGCATAAGTAAATTGAACATTCAGGAAAAAAGTCTTGGGAGTAAGGCTGCAGCTGTGTTGCTGGAAAAGTTGAGACCACCTTACTGGTTTTCAGCCCACCTGCACTGTAAGTTTGCTGCTCTTGTTCAACATGGTGAAGGTGGCCCCTTGACAAAATTTCTTGCTCTTGATAAGTGTCTTCCTAGGCGCAAATTTTTACAGGTTATAGAGATCGAAGCAGAGCCTGGGCCTTATGAGATTCATTATGATGAAGAATGGTTAGCAATAACACGAAGGTTCAATGAAATCTTCCCTTTGACAGCCAAAAATGCAAATTATGGAAATATAAAGCTTGAAATGGAAGATTGTCGGCAATGGATCAAAACCAGGTTAAAAGAAAGAGGAACAAAACCTTTTGATTTTGTTCAGACTGTTCCTTGTTACGATCCATCAAGACCTGTCTCCAACAGTCTGCTTGCTGGATATCCTCGAAATCCTCAGACTGAATCTTTGCTGAAGTTTCTCGAACTCCCTTATCTTCTTGATGACATGTTGGAATCTCATGGACCATCAGGGAACTCTATTCCTTTGTCAGATAGTGGTACGTTCTTTGACAGTGAAGACATTCCAATTGATGATATAGATGATGTGGAAGAAGAAACTGCAGAACCTGAAGATGCATAA 3111 43.2 MAWAMASDEERALEQQLEVQLHEQRESLAALQDALASDASNPELLELYDFRSFGDLWPLIFLNLICLNVKVHEELVQAIKDAEEGLLHLKRSRLLREADSVLRGRDSNATEDVKVEPLDPTDVEAEPLKDQSFIVGSKCRFRHTDGRWYDGEIVGLDGSNSAKISFLTPTTENMLVSILGRYMSAFAKLDLDFDSPKILSNLYGFSHIMILMLHNTTKVQICKFFLQQRCRFGTNCRLSHGVDIPLTSLRRYVPTIWNQSLAGSSIWALSSRNDIWKHAELESWDDALQVAQVVFRGDGSSQKLGPEDIALSEYAQINDEEESDSSLEQSDSSDYEEDDLQGLGFLESSQQRGIQKETTIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPVPVKVLPAKQSLDHALESQKENNTNDKNNGKKRSRGGKRKREKKFAAATRAAKEEEESRPDVFNLINNHLAMHNGALNDGSVKKLKDKGSADGKKVDRRTLIAYDDEVKDLRIRIEKLEEMVSRNKKEKVVYEAALRKLNETRKALAMAEAAHASASNAVTSREKEKRWLKYNPRNGIQNRLFGRGRRRSSNMRIAVEGCMHGDLDNVYRTLQYMEQVQNIKIDLLLCCGDFQAVRNENDLKSLNVPPKYRSMNSFWKYYSGAEVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGVAGVVKFGNIRIGGLSGIYNARHYHLGHYERPPYNENTIRSIYHVREYDVQKLMQVEEPIDIFLSHDWPLGITDYGNWKQLVRFKPFFEKESEAMKRIQKASINSNSCVASTSTLGYEESISKLNIQEKSLGSKAAAVLLEKLRPPYWFSAHLHCKFAALVQHGEGGPLTKFLALDKCLPRRKFLQVIEIEAEPGPYEIHYDEEWLAITRRFNEIFPLTAKNANYGNIKLEMEDCRQWIKTRLKERGTKPFDFVQTVPCYDPSRPVSNSLLAGYPRNPQTESLLKFLELPYLLDDMLESHGPSGNSIPLSDSGTFFDSEDIPIDDIDDVEEETAEPEDA 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26636360 26645293 + ClCG08G013800.2 Cla08g01377 279032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01377 1036 Gene3D - 590 863 IPR029052 -
Cla08g01377 1036 Coils Coil 498 549 - -
Cla08g01377 1036 Pfam CCCH-type zinc finger 221 241 IPR041367 -
Cla08g01377 1036 Pfam Calcineurin-like phosphoesterase 590 852 IPR004843 GO:0016787
Cla08g01377 1036 MobiDBLite consensus disorder prediction 317 338 - -
Cla08g01377 1036 Pfam Lariat debranching enzyme, C-terminal domain 867 987 IPR007708 GO:0006397|GO:0016788
Cla08g01377 1036 ProSiteProfiles Zinc finger C3H1-type profile. 216 243 IPR000571 GO:0046872
Cla08g01377 1036 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 5 177 - -
Cla08g01377 1036 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 215 569 - -
Cla08g01377 1036 Gene3D - 199 253 - -
Cla08g01377 1036 Pfam G-patch domain 368 410 IPR000467 GO:0003676
Cla08g01377 1036 SUPERFAMILY Metallo-dependent phosphatases 589 887 IPR029052 -
Cla08g01377 1036 SMART DBR1_2 858 990 IPR007708 GO:0006397|GO:0016788
Cla08g01377 1036 MobiDBLite consensus disorder prediction 414 428 - -
Cla08g01377 1036 MobiDBLite consensus disorder prediction 1000 1036 - -
Cla08g01377 1036 ProSiteProfiles G-patch domain profile. 368 414 IPR000467 GO:0003676
Cla08g01377 1036 MobiDBLite consensus disorder prediction 1015 1036 - -
Cla08g01377 1036 MobiDBLite consensus disorder prediction 429 443 - -
Cla08g01377 1036 MobiDBLite consensus disorder prediction 414 454 - -
Cla08g01377 1036 Coils Coil 14 34 - -
Cla08g01377 1036 SMART c3hfinal6 216 242 IPR000571 GO:0046872
Cla08g01377 1036 CDD MPP_Dbr1_N 592 882 IPR041816 -
Cla08g01377 1036 SMART G-patch_5 366 412 IPR000467 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01377 K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-] - csv:101207822 798.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01200 Cla-Chr6:25193631 Cla08g01377 Cla-Chr8:26636360 3.52E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g608 . Blo12g01042 . Bda03g00112 . . Bma04g00104 . Cmo05g00345 Cmo12g00324 . . . Car12g00354 Sed03g1654 Cpe07g00329 . Bhi04g00065 Tan02g2778 Cmetu03g2063 . Hepe10g0207 . Lcy13g1843 . . . . . . . . . . Cone20ag0311 . . . Cme03g01563 . . . . . . . . . . . . Cma12g00371 . Car05g00287 Cpe11g00287 . . . . . . . . Cla08g01377 Cam08g1847 Cec08g1425 Cco08g1558 Clacu08g1542 . Cre08g1325 Lsi08g01259 . Chy03g01073 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007675 2 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61594 PF00149 Metallophos 3.00E-10 CL0163 Cla TF