Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01382 ATGGCTAAGCCTCGCCCACGTTTTTATCTTTCATTCGTCCATGACTGGATTTCGTTGGCCCCACCGGATAGACTCTTTTCCGCCATTGGAGCAATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTATGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAACTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGACGTCGACGGTGATGCCGCTGATGTTAGTAGAGAAGAAGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACTAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCATCCTTCTAA 1107 52.76 MAKPRPRFYLSFVHDWISLAPPDRLFSAIGAMASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 368
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 26678492 26679793 - ClCG08G013860.2 Cla08g01382 279037
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01382 368 CDD Bbox1_BBX-like 79 122 - -
Cla08g01382 368 Pfam B-box zinc finger 35 74 IPR000315 GO:0008270
Cla08g01382 368 Pfam B-box zinc finger 77 122 IPR000315 GO:0008270
Cla08g01382 368 ProSiteProfiles Zinc finger B-box type profile. 75 122 IPR000315 GO:0008270
Cla08g01382 368 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
Cla08g01382 368 ProSiteProfiles Zinc finger B-box type profile. 32 79 IPR000315 GO:0008270
Cla08g01382 368 SMART bboxneu5 32 79 IPR000315 GO:0008270
Cla08g01382 368 SMART bboxneu5 80 122 IPR000315 GO:0008270
Cla08g01382 368 Pfam CCT motif 307 349 IPR010402 GO:0005515
Cla08g01382 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 31 368 - -
Cla08g01382 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 31 368 IPR045281 GO:0009909
Cla08g01382 368 CDD Bbox1_BBX-like 36 79 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00696 Cla-Chr6:8846807 Cla08g01382 Cla-Chr8:26678492 4.74E-10 dispersed
Cla07g01450 Cla-Chr7:31758267 Cla08g01382 Cla-Chr8:26678492 1.51E-10 dispersed
Cla07g01540 Cla-Chr7:32620563 Cla08g01382 Cla-Chr8:26678492 1.72E-53 dispersed
Cla08g01382 Cla-Chr8:26678492 Cla11g01201 Cla-Chr11:25191166 6.77E-79 dispersed
Cla11g00377 Cla-Chr11:4256371 Cla08g01382 Cla-Chr8:26678492 7.80E-06 dispersed
Cla08g01382 Cla-Chr8:26678492 Cla06g01299 Cla-Chr6:26345424 3.36E-107 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61595 PF00643 zf-B_box 4.10E-06 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01382 - - csv:101208063 656.366