Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01382 | ATGGCTAAGCCTCGCCCACGTTTTTATCTTTCATTCGTCCATGACTGGATTTCGTTGGCCCCACCGGATAGACTCTTTTCCGCCATTGGAGCAATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTATGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAACTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGACGTCGACGGTGATGCCGCTGATGTTAGTAGAGAAGAAGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACTAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCATCCTTCTAA | 1107 | 52.76 | MAKPRPRFYLSFVHDWISLAPPDRLFSAIGAMASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 26678492 | 26679793 | - | ClCG08G013860.2 | Cla08g01382 | 279037 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01382 | 368 | CDD | Bbox1_BBX-like | 79 | 122 | - | - | |
| Cla08g01382 | 368 | Pfam | B-box zinc finger | 35 | 74 | IPR000315 | GO:0008270 | |
| Cla08g01382 | 368 | Pfam | B-box zinc finger | 77 | 122 | IPR000315 | GO:0008270 | |
| Cla08g01382 | 368 | ProSiteProfiles | Zinc finger B-box type profile. | 75 | 122 | IPR000315 | GO:0008270 | |
| Cla08g01382 | 368 | ProSiteProfiles | CCT domain profile. | 307 | 349 | IPR010402 | GO:0005515 | |
| Cla08g01382 | 368 | ProSiteProfiles | Zinc finger B-box type profile. | 32 | 79 | IPR000315 | GO:0008270 | |
| Cla08g01382 | 368 | SMART | bboxneu5 | 32 | 79 | IPR000315 | GO:0008270 | |
| Cla08g01382 | 368 | SMART | bboxneu5 | 80 | 122 | IPR000315 | GO:0008270 | |
| Cla08g01382 | 368 | Pfam | CCT motif | 307 | 349 | IPR010402 | GO:0005515 | |
| Cla08g01382 | 368 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 5 | 31 | 368 | - | - | |
| Cla08g01382 | 368 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 31 | 368 | IPR045281 | GO:0009909 | |
| Cla08g01382 | 368 | CDD | Bbox1_BBX-like | 36 | 79 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g00696 | Cla-Chr6:8846807 | Cla08g01382 | Cla-Chr8:26678492 | 4.74E-10 | dispersed | |
| Cla07g01450 | Cla-Chr7:31758267 | Cla08g01382 | Cla-Chr8:26678492 | 1.51E-10 | dispersed | |
| Cla07g01540 | Cla-Chr7:32620563 | Cla08g01382 | Cla-Chr8:26678492 | 1.72E-53 | dispersed | |
| Cla08g01382 | Cla-Chr8:26678492 | Cla11g01201 | Cla-Chr11:25191166 | 6.77E-79 | dispersed | |
| Cla11g00377 | Cla-Chr11:4256371 | Cla08g01382 | Cla-Chr8:26678492 | 7.80E-06 | dispersed | |
| Cla08g01382 | Cla-Chr8:26678492 | Cla06g01299 | Cla-Chr6:26345424 | 3.36E-107 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61595 | PF00643 | zf-B_box | 4.10E-06 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01382 | - | - | csv:101208063 | 656.366 |