Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01390 ATGAGTGAGATTACTTATTCTTTGCTCAAATTCATGATCCTGTTCAATACTTATGTCTACACCACCAAGGCCGGCCCAATAATTGAACTTGGGCTAAAGGTAGTGGACGAAAGGTGGCCCAGCCCAATAACAAATGGCAAATTCCCGAATTGGCTGCGCTGCGCCTCATTTGGAATCGAAGCGGAGTTGATGAATCTTCCTCTTGTTCTTCCTCAGCATCGCTCCTTCTTCAATTTGCTCTTGCGGTATACCCATCAGAAAGATCTTCAGAAGGGCAAAGCCATTCACGCTCAACTCCTCAGAACTGGTTCATTCTCTTCAGTTTACCTCACCAACAGTCTTGTTAACTTGTATGCAAAATGTGGAAGCCTTGTGAAGGCCAAGCTCGTCTTCGAGAGTATAACCAACAAAGACGTCGTCTCATGGAATTGTCTCATCAATGCCTATTCTCAACAGGGTCCCGTTGGATGTTCGTTTGTTATGGAGCTTTTTCAGAGAATGAGGGCGGAGAACACTCTGCCCAATGCCCATACTTTTGCTGGGGTTTTCACTGCTGCTTCAAGTTCACTCGAAACTTTCGGTGGTCTGCAGGCCCATGCGCTTGCGATCAAGACTTCTAGCTTTTATGATGTTTTTGTTGGCAGTTCGCTTCTTAATATGTATTGCAAAATTGGGTGTCTGCTGGATGCTCGTAAGGTGTTCGACAGAATTCCCGAGAGGAATTCTGTTTCTTGGTCTACTATGATTTCAGGGTATGCGATGGAAAGGATGGCTTCTGAGGCTTGGGAGCTGTTTTTATTGTTGCGTCGTGAAGAGGGGATCCATAACGAGTTTATCTATACCGGTGTGCTTAGTGCACTGACGGTTCCTGAGCTTGTTCACTATGGTAAGCAAATTCATTGTCTTGCCTTCAAAAATGGGTTGTTATCAATTGTTTCTGTTGGGAATGCTCTTGTTACGATGTATGGTAAATGTGGATGTTTAGATGATGCGCTTAAAACATTTGAATTTTCTGGTGATAAGAACTCTATTACTTGGTCAGCTATGATAACTGGCTATGCGCAAGCTGGGGACTCGCATGAGGCTTTAAAGCTGTTTTCTTATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACATTGGTGCTCTGAAAGAGGGGAAACAAATGCATGGATATTCCTTGAAGATGGGATATGAATCCCAGATATATATCATGACAGCTTTGGTTGATATGTATGCAAAATGTGGAAGCCTAGTTGATGCCCGAAATGGGTTTGATTATTTAAAAGAACCGGATATTGTTTTGTGGACTTCCATGATTGGTGGATATGCTCAAAATGGTGAAAATGAAACTGCTCTGACTCTATATTGTAGAATGCAGATGGAAGGGATTCTTCCCAATGAGCTAACTATGGCTAGTGTCTTGAGAGCATGTTCAAGCCTTGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCGGACAATTAAATATGGATTTAATCTTGAAGTTCCAATAGGTAGTGCTCTTTCTACCATGTATGCGAAGTGTGGTAGTTTAGAAGACGGGAACCTGGTATTTAGGAGGATGCCTACTCGAGATATTCTGTCATGGAATGCAATGATATCTGGTCTTTCTCAAAATGGAGAGGGTTTTAAAGCTCTTGAACTCTTTGAAGAGATGCGGCAAGGCACGACGAAACCCGACTATGTTACTTTTGTGAACATTCTTTCTGCGTGTAGCCACATGGGATTGGTGGAAAGAGGTAAGGTCTATTTCAAGATGATGCGTGATGAGTTTGGTATTGTTCCAAGAGTCGAGCATTATGCTTGCATGGTAGATATTCTGAGTCGTGCAGGTAAGCTACAGGAAGCCAAAGAGTTCATAGAATCTGTCACCATTGATCATGGGGAGAAACTAATGGAGTTAGGTTCAGAAGAATCATCTGCTTATGTATTATTGTCTAGTATTTATGCTGCACTGGGAAGATCTGATGATGTCGAACGGGTGAGACGGGTGATGAAACTTCGAGGAGTGAATAAGGATCCAGGTTGTAGTTGGATTGAATTGAAAAGTCAGTCGCCAAGAAACAACGTTTTTGCTAACATTTGGCTACATGCATTTTTGGAAGAAAAATGTTCTGTCCAGAATTTTCTTCCCTTCCATGATTGTTTGTCAACTAGCATCTCTTATAATGTGAAATCTGACATGAACATATATTTTATTACAGAAAAATCTACAACACATGCAATATTTTCTGCCATTACTACCAAAAAAAACTCCTACAACAAAACCCAAAAAGACCTCTGTATCCCAACCTCATCTTTGAGTCTTCATCATCATGCAAAACACCTCATGGAGTACGTAGAAACTGCAGAATCCACAGATGGCGAGGGGGAGAAGAGCCTGAGATAA 2445 41.76 MSEITYSLLKFMILFNTYVYTTKAGPIIELGLKVVDERWPSPITNGKFPNWLRCASFGIEAELMNLPLVLPQHRSFFNLLLRYTHQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSLVKAKLVFESITNKDVVSWNCLINAYSQQGPVGCSFVMELFQRMRAENTLPNAHTFAGVFTAASSSLETFGGLQAHALAIKTSSFYDVFVGSSLLNMYCKIGCLLDARKVFDRIPERNSVSWSTMISGYAMERMASEAWELFLLLRREEGIHNEFIYTGVLSALTVPELVHYGKQIHCLAFKNGLLSIVSVGNALVTMYGKCGCLDDALKTFEFSGDKNSITWSAMITGYAQAGDSHEALKLFSYMHFNGNKPSEFTFVGVINACSDIGALKEGKQMHGYSLKMGYESQIYIMTALVDMYAKCGSLVDARNGFDYLKEPDIVLWTSMIGGYAQNGENETALTLYCRMQMEGILPNELTMASVLRACSSLAALEQGKQIHARTIKYGFNLEVPIGSALSTMYAKCGSLEDGNLVFRRMPTRDILSWNAMISGLSQNGEGFKALELFEEMRQGTTKPDYVTFVNILSACSHMGLVERGKVYFKMMRDEFGIVPRVEHYACMVDILSRAGKLQEAKEFIESVTIDHGEKLMELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQSPRNNVFANIWLHAFLEEKCSVQNFLPFHDCLSTSISYNVKSDMNIYFITEKSTTHAIFSAITTKKNSYNKTQKDLCIPTSSLSLHHHAKHLMEYVETAESTDGEGEKSLR 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26788622 26792284 + ClCG08G013940.2 Cla08g01390 279045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01390 814 Pfam PPR repeat 215 241 IPR002885 -
Cla08g01390 814 Pfam PPR repeat 243 270 IPR002885 -
Cla08g01390 814 Pfam PPR repeat 112 137 IPR002885 -
Cla08g01390 814 Pfam PPR repeat 140 155 IPR002885 -
Cla08g01390 814 Pfam PPR repeat 316 336 IPR002885 -
Cla08g01390 814 Gene3D Tetratricopeptide repeat domain 299 400 IPR011990 GO:0005515
Cla08g01390 814 Gene3D Tetratricopeptide repeat domain 65 194 IPR011990 GO:0005515
Cla08g01390 814 Gene3D Tetratricopeptide repeat domain 202 293 IPR011990 GO:0005515
Cla08g01390 814 Gene3D Tetratricopeptide repeat domain 401 504 IPR011990 GO:0005515
Cla08g01390 814 Pfam E motif 648 699 IPR046848 -
Cla08g01390 814 Pfam PPR repeat family 341 388 IPR002885 -
Cla08g01390 814 Pfam PPR repeat family 442 490 IPR002885 -
Cla08g01390 814 Pfam PPR repeat family 544 591 IPR002885 -
Cla08g01390 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Cla08g01390 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 174 IPR002885 -
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 86 187 - -
Cla08g01390 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 285 642 - -
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 195 490 - -
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 285 642 - -
Cla08g01390 814 Gene3D Tetratricopeptide repeat domain 519 709 IPR011990 GO:0005515
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 86 187 - -
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 648 697 - -
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 195 490 - -
Cla08g01390 814 TIGRFAM PPR: pentatricopeptide repeat domain 445 479 IPR002885 -
Cla08g01390 814 TIGRFAM PPR: pentatricopeptide repeat domain 243 271 IPR002885 -
Cla08g01390 814 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Cla08g01390 814 TIGRFAM PPR: pentatricopeptide repeat domain 547 573 IPR002885 -
Cla08g01390 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 271 IPR002885 -
Cla08g01390 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Cla08g01390 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 648 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01390 - - - csv:101213039 1144.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01390 Cla-Chr8:26788622 Cla05g00861 Cla-Chr5:8519771 1.77E-57 dispersed
Cla08g01390 Cla-Chr8:26788622 Cla09g00659 Cla-Chr9:6258153 8.50E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g143 . . . . . . . . . . . . . . . . . Bhi04g00088 . . . . . . Cla08g01390 . . . . . . . . . . . . . Cme03g01545 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012001 0 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 2 1 1 0 0 1 25