Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01393 ATGATAAACGCCTTTAATATTCAATTCAAAATCAAACTTTATAAAGAAAAGATAAGTGCATTTGATTCGTTTCTCTTCTTTCCTTACCAACCAAATTCAATGGCGACGCCGGTGAAAGTGTACGGACCGCCGTTGTCCACCGCCGTGTCTAGAGTCCTGGCCTGTCTTCTCGAGAAGGACGTTCAGTTTCAGCTCTTACCTGTGAACATGGCAAAAGGAGAACACAAAAGCCTTGAATATCTCAAGATTCAGGTACATTTTCAATCTTCTTCTGAATCTCTCTGTATAACTCTCATTTTACTCATCAATGTTCGATTCAACAGCCATTCGGCCAAGTCCCTGCGTTCCAAGACGAAAGCATCTCTCTCTTCGGTAATTGACATTCGATTCGCTCTTTCGATCTTCCAATTTTATCTCCTAAACTTCAAATTGTTCGTCCATAACTTAACCCAGAAATCCAGAGCAATCTGCCGCTACATTTGCAATAAGCACGCGGAAAAGGGGAATAAAGGACTGTACGGACTGGATCAGTTAGGGAAAGCTTCGATCGATCAATGGATTGAAGCGGAGGGGCAAAACTTCAATCCGGCGAGCTCGATTCTGGTTTTTCAACTGGCTTTTGCGCCGAGGATGAAGGTGCCACAGGACGAGAAGGCGATTAAGCAGAACGAGGAGAAGGTGTCGAAGGTGCTCGATGTGTACGAGCAGAGGCTGGGAGAGAGTCGTTTTTTGGCCGGAGATGAGTTTTCGTTGGCCGATCTTTCTCATTTGCCCAATGGGCATTACCTGGTGAATGTGGCGGATAGGGCGGAGCTTTTCACGTCGAGGAAGAACGTGGAGCGGTGGTGGAATGAGATCTCCGGTCGGGAATCTTGGAAGGAGGTGGTTGAATTGCAGAACAAGGCATCTTCGTGA 915 46.23 MINAFNIQFKIKLYKEKISAFDSFLFFPYQPNSMATPVKVYGPPLSTAVSRVLACLLEKDVQFQLLPVNMAKGEHKSLEYLKIQVHFQSSSESLCITLILLINVRFNSHSAKSLRSKTKASLSSVIDIRFALSIFQFYLLNFKLFVHNLTQKSRAICRYICNKHAEKGNKGLYGLDQLGKASIDQWIEAEGQNFNPASSILVFQLAFAPRMKVPQDEKAIKQNEEKVSKVLDVYEQRLGESRFLAGDEFSLADLSHLPNGHYLVNVADRAELFTSRKNVERWWNEISGRESWKEVVELQNKASS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26798196 26799772 - ClCG08G013970.2 Cla08g01393 279048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01393 304 PANTHER GLUTATHIONE S-TRANSFERASE RHO 37 300 - -
Cla08g01393 304 SFLD Glutathione Transferase (cytosolic) 153 287 IPR040079 -
Cla08g01393 304 SUPERFAMILY Thioredoxin-like 36 84 IPR036249 -
Cla08g01393 304 SUPERFAMILY GST C-terminal domain-like 169 297 IPR036282 -
Cla08g01393 304 Pfam Glutathione S-transferase, C-terminal domain 205 290 IPR004046 -
Cla08g01393 304 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 176 304 IPR010987 -
Cla08g01393 304 Gene3D - 176 296 - -
Cla08g01393 304 Gene3D Glutaredoxin 35 174 - -
Cla08g01393 304 CDD GST_C_Phi 180 296 IPR034347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01393 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101213523 370.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01393 Cla-Chr8:26798196 Cla09g00568 Cla-Chr9:5226530 6.15E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g151 . . . . . . . . . . . . . . . . . Bhi04g00084 . . . . . . Cla08g01393 Cam08g1867 Cec08g1446 Cco08g1579 Clacu08g1561 . Cre08g1345 . . . Cone20ag0053 . . . Cme03g01542 . . Bda08g01187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01285 . Chy03g01050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005856 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 5 38