Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01397 ATGGAAGACATTTGGAAGCTAAGCCATTTATTGATGACAGTATTTCTATACACTTTCGCAACCATGATGATCGTTCCAGGCATTACAGATGTGACCATGTCGGCTCTGTGTCCTGGTCAAGACGAGTGTTCTCTCGCCATTTATCTCACCGGCTTTCAACAAGTCGTGACGGGGCTTGGAGCGTTGCTTATGTTGCCATTGCTTGGAAACCTGTCTGATAAATTTGGGAGGAAGACTCTACTCACCATTCCCTTGATGCTCACTATAATTCCCCTTGTACGGTTTGTGAAGGGAGCCGACAATGTACCGGAACACCAACGAGCTTTTGCATTCGGAATGCTATCCGCCATTGGATCTTCTGCTTCCGTCTGCGGGACTCTCTGTGCTCGTTTTCTCTCCATTCCATCCACTTTTCAGGTAGCAGCTTCCACGGCGGCTGCGGCGACAGTGTATATGAGGGTTTTCCTTTCTGATTCTGTCGCCGATTGTAACCTTTCTGCTCCGCTACTCTCCGGGGAGAATGTAGAATCTGTTTTTTTGGATCGAGTTTCCCCCAAAAAAGAAAAAATTATTGCCACCTTGCCTTCGGTGAAGGACCTTTTTTCCCTGTTGAAGACGAGCTTGACATTTTCACAATTGGCCATTGTTGCATTTTTTAGCAATCTCGCTGATGTTGGCCTTCGTGCTTCTATACTGTACTATTTAAAAGCCAGATTTCAATTTAACAAGGATAGGTTTGCTGATTTGATGGTGATTTCTGGGGCTGCTTCGACTATTTCACAGGCATGTCGTGCTATTTTATTTTACTCTCTACTTTTAATCCCCATCTTGGTTCCTGTTCTAGGAGAGGACAAGCTGCTCTCCGTTGGGCTCTTTTTCTTCTGCAGTCAGATGCTTCTTTACAGCTTTGCTTGGGCTAACTGGTTGCAAAGTATAGTGTCAAAACAAGTTAGTGCAAGCGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCTTCATTTGCCAATGTTGTTTCTCCATTGGTATTCTCTCCTTTAACAGCATTGTTTCTCTCTGAAAACGCTCCATTTTATTTCCCTGGATTTAGCATCCTGTGCATTGGATCTTCTGCGCTAAGCCATTTGTTGGTCACAGTATTTTTATACACTTTTGCAACCATGATGATCATTCCAGCCATTACAGATGTGACCATGTCGGCTCTTTGTCCCGGTCAAGACGAGTGTTCTCTCGCTATTTACTTCACCGGCTTTCAACAAATCGTGACGGGGGTTGGGGCGTTGCTAATGATGCCATTAGTGGGAAACTTGTCGGACAAGTATGGAAGAAAGACTATGCTCACAATTCCTATGATTCTCACCGTAATTCCCCTGGGGATATTAGGGTATGGGAGATCGAGGGATTTGTTCTACGTTTATTTTGTGTTCAAGTGTGTGACGAGTACGGTTTGTGAAGGGAGCGTTCAGTGTTTGGCAATTGCTCATGCGGCTGACAATGTACCGGAGCACCGGAGAGCCTCTGCATTCGGACTACTATCCGCCATTGGATCTTCTGCTTTCGTCTGCGGGACTCTTTGTGCTCGTTTTCTCTCCATTCCGTCCACTTTTCAGGTAGCGGCTTTCATGGCGGCTGTGGCGGCAATTTATATGAGGATTTTCCTTACTGATTCTGTCGCCGATTGCAATCTTTCTGCTCCCTTACTGTCTGGGGAGAATGTAGAATCTGTTTCTTCGGATACAGTTTCGCCCAAAAAAGAACAAATTATTTCGACCTTGCCTTCACTGAAGGACCTTTTTGCACTGTTGAAGACTAGCTTGACATTTTTACAAGCGGCCATTGTTGCATTTTTTTGCAATCTTGCTGATGTTGGCCTTCATGCTTCTATACTGCTACTTTTAATGCCCATCTTGGTTCCTGCTCTAGGAGAGCACAGGCTGCTCTCAGTTGGACTCTTTTTCAACTGCATTCATATGCTTCTTTACAGCTTTGCTTGGGCTGACTGGGTTGCCTACGTTGCTGGAATGTTTTCCATTTGGTTTATTTTCTGGCGGCCTTGTGTGAGTGCAGACCTCTTTGATCATCTAGAAATTATTATTTCAATTGACAATTTGATTGAACTAAATTTATTTCGCATTTGTAATCCACAGCTACAAAGCATAGTATCAAAGCAAGTTGGTGCAAGCGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCTTCATTTGCCAACGTTGTTTCTCCATTGGTATTCTCCCCTTTAACAGCTTTGTTTCTCTCTGAAAACGCTCCATTTTATTTCCCTGGATTTAGCATTATGTGCGCTGGATCTGCAGCGATGATAGCATTTGGTCAGAGTATGATGATTAGGGATCCTATCAAAGCCAGCGTTTTTCTATACACTTTTGCAACCATGATGGCCTTCCCAGCCATTACAGATGTGACCATGTCGGCTCTGTGTCCCGGTCAAGACGAGTGTTCTCTCGCCATTTACTTCACCGGCTTTCAACAAGTTGTGAGTGGGATTGGGGCGTTGCTAATGCTGCCGTTGCTCGGAAACCTCTCCGATAAGTTTGGGAGGAAGACTATTCTTACCATTCCCTTGCTTCTCACCGTTATTCCCCTCGGGATATTGGGATATGGGAGGTCCACAGATTTTTTCTACATCTATTTTGTGTTTAAGTGTGTCACGAGTATGGTTTGTGAAGGAAGCGTTCAATGCTTAGCCGTCGCCTATGCGGCCGATAATGTACCGGAACACCAGCGAGCTTCTGCATTCGGAATGCTATCTGCCATTATCTCTTCTGCTTCCGTTTGCGGGACTCTCTGTGCTCGTTTTCTCTCCATTCCAACCACATTTCAGGCAGCGGCTGCCACGGCGGCTGTGGCGGCAGTGTATATGAGGCTTTTCCTTACTGATTCTGCGGCCGATTGCAATCTTTCTGCTCCCTTGCTGTCTCCGGAGAACGCAGAATCTGTTTATTTGGATCCAATTTCGTTTAAGAAGGACAAATATGCTACGACCTTGCCTTCGCTGACGGACCTTTTTTCCCTGTTGAAGACTAGCTTGACATTTTCGCAATTGGCCGTTGTTGCATTTTTTAGCAATCTTGCTGATGTCGGCCATCATGCTTCAATAATGTACTATTTAAAAGCCAAATTTCACTTTGACAAGGATAGAATTGCTGACTTGATGTTTGTATCTGCATTTCTTTCTATGTCAAGTTTCAGTTTAGAATATGACACTATCCATCTTTGCTCTATGTGTGTGTTCGTAGTTCTTACCTTAAACGAATCATTGCAGATACTTTTAATGCCCATCTTGGTTCCTGTTCTAGGAGAGAATAGGCTGCTCTCAGTTGGGGTCTTTTTCAACTGCATTCATATGCTTCTTCACAGCTTAGCTTGGTCTGAATGGGTTTCCTATGTTGCTGCAATGTTTTCCGTTCTGTATATTTTCTGGCAGCCTTGCCTGCAAAGCATAGTGTCGAAACAAGTTGGTGCAAGTGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCCTCATTTGCCAATGTTGTTTCTCCATTTGTATTCTCCCCTTTAGCAGCTTTGTTTCTCTCTGATAACGCTCCATTTCATTTCCCTGGATTTAGCATCATGTGCGCTGGATCTGCTGCGATGATAGCATTTGTTCAGAGTATGATGATAAGGGGTCCTACCAAAGCTTGCATCAGCAGCCAT 3729 44.57 MEDIWKLSHLLMTVFLYTFATMMIVPGITDVTMSALCPGQDECSLAIYLTGFQQVVTGLGALLMLPLLGNLSDKFGRKTLLTIPLMLTIIPLVRFVKGADNVPEHQRAFAFGMLSAIGSSASVCGTLCARFLSIPSTFQVAASTAAAATVYMRVFLSDSVADCNLSAPLLSGENVESVFLDRVSPKKEKIIATLPSVKDLFSLLKTSLTFSQLAIVAFFSNLADVGLRASILYYLKARFQFNKDRFADLMVISGAASTISQACRAILFYSLLLIPILVPVLGEDKLLSVGLFFFCSQMLLYSFAWANWLQSIVSKQVSASEQGKAQGCISGISSFANVVSPLVFSPLTALFLSENAPFYFPGFSILCIGSSALSHLLVTVFLYTFATMMIIPAITDVTMSALCPGQDECSLAIYFTGFQQIVTGVGALLMMPLVGNLSDKYGRKTMLTIPMILTVIPLGILGYGRSRDLFYVYFVFKCVTSTVCEGSVQCLAIAHAADNVPEHRRASAFGLLSAIGSSAFVCGTLCARFLSIPSTFQVAAFMAAVAAIYMRIFLTDSVADCNLSAPLLSGENVESVSSDTVSPKKEQIISTLPSLKDLFALLKTSLTFLQAAIVAFFCNLADVGLHASILLLLMPILVPALGEHRLLSVGLFFNCIHMLLYSFAWADWVAYVAGMFSIWFIFWRPCVSADLFDHLEIIISIDNLIELNLFRICNPQLQSIVSKQVGASEQGKAQGCISGISSFANVVSPLVFSPLTALFLSENAPFYFPGFSIMCAGSAAMIAFGQSMMIRDPIKASVFLYTFATMMAFPAITDVTMSALCPGQDECSLAIYFTGFQQVVSGIGALLMLPLLGNLSDKFGRKTILTIPLLLTVIPLGILGYGRSTDFFYIYFVFKCVTSMVCEGSVQCLAVAYAADNVPEHQRASAFGMLSAIISSASVCGTLCARFLSIPTTFQAAAATAAVAAVYMRLFLTDSAADCNLSAPLLSPENAESVYLDPISFKKDKYATTLPSLTDLFSLLKTSLTFSQLAVVAFFSNLADVGHHASIMYYLKAKFHFDKDRIADLMFVSAFLSMSSFSLEYDTIHLCSMCVFVVLTLNESLQILLMPILVPVLGENRLLSVGVFFNCIHMLLHSLAWSEWVSYVAAMFSVLYIFWQPCLQSIVSKQVGASEQGKAQGCISGISSFANVVSPFVFSPLAALFLSDNAPFHFPGFSIMCAGSAAMIAFVQSMMIRGPTKACISSH 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26842136 26875573 - ClCG08G014010.1 Cla08g01397 279052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01397 1243 Pfam Major Facilitator Superfamily 797 1191 IPR011701 GO:0022857|GO:0055085
Cla08g01397 1243 Pfam Major Facilitator Superfamily 376 749 IPR011701 GO:0022857|GO:0055085
Cla08g01397 1243 Gene3D MFS general substrate transporter like domains 373 784 IPR036259 -
Cla08g01397 1243 Gene3D MFS general substrate transporter like domains 6 372 IPR036259 -
Cla08g01397 1243 Gene3D MFS general substrate transporter like domains 794 1230 IPR036259 -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 796 1076 - -
Cla08g01397 1243 SUPERFAMILY MFS general substrate transporter 799 1227 IPR036259 -
Cla08g01397 1243 ProSiteProfiles Major facilitator superfamily (MFS) profile. 794 1237 IPR020846 GO:0022857
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 6 94 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 1099 1234 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 711 793 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 94 - -
Cla08g01397 1243 CDD MFS_SLC46_TetA_like 376 789 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 711 793 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 372 688 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 99 370 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 1099 1234 - -
Cla08g01397 1243 SUPERFAMILY MFS general substrate transporter 11 373 IPR036259 -
Cla08g01397 1243 SUPERFAMILY MFS general substrate transporter 376 783 IPR036259 -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 796 1076 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 372 688 - -
Cla08g01397 1243 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 99 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01397 - - - csv:105434628 649.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01087 Cla-Chr2:23045211 Cla08g01397 Cla-Chr8:26842136 1.96E-96 dispersed
Cla08g00829 Cla-Chr8:20694294 Cla08g01397 Cla-Chr8:26842136 5.37E-41 dispersed
Cla02g00405 Cla-Chr2:3953219 Cla08g01397 Cla-Chr8:26842136 2.61E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g159 . . . . . . . . Cmo05g00330 . . . . . . . . . . . . . . . Cla08g01397 Cam08g1874 Cec08g1451 Cco08g1585 Clacu08g1567 . Cre08g1351 . . . . . . . Cme03g01539 Blo17g00734 . Bda08g01188 . . Bpe05g00163 . . . . . . Cma05g00327 Car05g00274 . . . . . . . . . . . . . . . . . Lsi08g01291 . Chy03g01047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123