Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01399 ATGATTTCCGTTTGCTCTGCTAGAACAATTCAAGCTTCACCCTCTTCTATTCAGTTGTTTTTCCCTCGAAATCGTAGAAGAATCACTTCCGATGTTCTTCGATTTTCCACCAATCTCTCCACTAGATGCTCGGATGACGATGAATATGGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAATCAGACTGGAAGAGACCGTGGACGTAAATCCTGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTAACGGCATTAGTAGGGCTCGTGTTCAGTCCAGTATTAGGGCGGGACTAGTTTCAGTCAATGGCCGAATTATCGATAAGGTAGCGACATTTTTCCGTAGAGAGAAGCTACATTTGATGACTTTGTTTTATTTTTATTTATTTAGCTTCTTTCAGTTTTACTGCTATGGCTATCAAATGGTTTCTCACAATGTAAAAGCTGGGGATATGATCAATTGTACAATTTCCGAGTTGCAACCATTGAGAGCTGAACCCGAAGATATTGATCTGGATATAGTTTATGAAGATGCACATGTTTTAGTCGTAAACAAACCAGCGCACATGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCAATGGTTGCAACATCAAATGGGGAGCATCCGTCGGATATGGATATTTCTGATGACGAGTTCAGTTCAATTGAAATTTTTTCTAGAGTTTCTGAGGCACCTATTCGTCCTGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACACTCAATTGAGAGAGTTTATATCAGTCTCACATGTGGAGTTCCTCCCTCAACTGCTGGACGTATTGAGGTACCAATTTGCCGTGATCCGAACAATCGTATACGCATGGCTGCAGTATCTGGAACAAATAACAATCCACATGCAAAGCACGCTGCTAGTAGGTACAAAGTTATGGAAATTTTAGCTCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGATCCGTGCACACGCGAAGTATATGGGAATACCGTTACTTGGAGATGAGGTCTATGGAGGTACTAAGAGCATGGTCATGTCGCTGCTTCGAACTAAAACATCATCTAGTTGTCACAGCCAACTTATGCAACTTGTTTCTTCATTAGAGAGGCCCTGTCTTCATGCTCTGACTCTTGGGTTTGTACATCCTCACACAGGGAAGAATATACGATTTTCATGCCCACCTCCAACAGATTTTGCTGAAATTTTGAGTCAGCTTCGTGAAATAGGCACAAAAAAGGTATCCCTTATTTTGATTTCTTTCATTTATTTACTCGAGCCAAGCTCTTTGCATGGTAATTGGTTATTTTGCAGATTTAGCATCCAACCATCATAA 1470 41.7 MISVCSARTIQASPSSIQLFFPRNRRRITSDVLRFSTNLSTRCSDDDEYGEAQSERIANYAGIRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVATFFRREKLHLMTLFYFYLFSFFQFYCYGYQMVSHNVKAGDMINCTISELQPLRAEPEDIDLDIVYEDAHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNGEHPSDMDISDDEFSSIEIFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEVPICRDPNNRIRMAAVSGTNNNPHAKHAASRYKVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMVMSLLRTKTSSSCHSQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFAEILSQLREIGTKKVSLILISFIYLLEPSSLHGNWLFCRFSIQPS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26893805 26897033 - ClCG08G014040.2 Cla08g01399 279054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01399 489 SUPERFAMILY Alpha-L RNA-binding motif 76 116 - -
Cla08g01399 489 ProSitePatterns Rlu family of pseudouridine synthase signature. 256 270 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla08g01399 489 Pfam RNA pseudouridylate synthase 183 370 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla08g01399 489 CDD S4 76 188 - -
Cla08g01399 489 ProSiteProfiles S4 RNA-binding domain profile. 76 115 - -
Cla08g01399 489 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 147 452 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla08g01399 489 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 75 453 - -
Cla08g01399 489 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 75 453 - -
Cla08g01399 489 CDD PseudoU_synth_RluA_like 184 425 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cla08g01399 489 Gene3D Pseudouridine synthase 166 440 - -
Cla08g01399 489 Gene3D - 61 126 IPR036986 GO:0003723
Cla08g01399 489 SUPERFAMILY Pseudouridine synthase 169 452 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01399 K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] - csv:101213921 765.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01483 Cla-Chr2:29353156 Cla08g01399 Cla-Chr8:26893805 9.42E-14 dispersed
Cla08g01074 Cla-Chr8:23428653 Cla08g01399 Cla-Chr8:26893805 1.61E-08 dispersed
Cla08g01399 Cla-Chr8:26893805 Cla09g02004 Cla-Chr9:37609728 3.41E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g167 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01399 Cam08g1878 Cec08g1455 Cco08g1589 Clacu08g1570 . Cre08g1354 . Cone7ag1911 . . . . . Cme03g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01295 . Chy03g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005129 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 4 1 36