Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01405 ATGGAGAAACTTTGTTTAGCATTTGCTTTCTCTCTCGCTCTCTCCAACTTCTTCTTCATTTCTGTCAATGCATTTACCGCGTCGGGATGGAACCCCGCCCATGCTACTTTCTATGGGGATAGCGATGCCTCGGGAACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACCAGACGGGTTATGGAACAAGGACGGCGGCGCTGAGCACCGCGTTGTTCAACGACGGCGCGTCGTGTGGTCAGTGTTTCAAGATGATGTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACGGTGACGGCCACCAATTTTTGCCCACCAAACTACGCTCTCCCAAACAACAATGGCGGATGGTGTAACCCTCCGCTTAAACATTTCGACATGGCTCAGCCTGCTTGGGAGAAGATCGGCATTTACAGAGGCGGAATCATCCCTGTTCTCTACCAAAGAGTTCCCTGCGTAAAGAAAGGAGGTGTGAGATTCACAGTAAATGGAAGAGATTATTTTGAACTAGTTTTGATAAGCAATGTGGGAGGAGCTGGGGACATCAAATCAGTGTCTATTAAAGGGTCAAAATCCAACAATTGGACCCCAATGTCAAGGAATTGGGGGGCCAATTGGCAGTCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGGTCACCACAAGTGATGGCCAAACCCAAGTTTTCAACAATGTTGTACCTTCATCTTGGAGATTTGGCCAAACTTTTGCAAGCAAGGTCCAATTCAGTTGA 777 47.88 MEKLCLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKMMCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISNVGGAGDIKSVSIKGSKSNNWTPMSRNWGANWQSNSYLNGQSLSFKVTTSDGQTQVFNNVVPSSWRFGQTFASKVQFS 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26945619 26947942 - ClCG08G014110.2 Cla08g01405 279060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01405 258 PANTHER EXPANSIN 11 257 - -
Cla08g01405 258 Pfam Lytic transglycolase 65 153 IPR009009 -
Cla08g01405 258 Gene3D - 19 158 IPR036908 -
Cla08g01405 258 SMART dpbb_1 65 153 IPR007112 -
Cla08g01405 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Cla08g01405 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Cla08g01405 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cla08g01405 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Cla08g01405 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Cla08g01405 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Cla08g01405 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Cla08g01405 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cla08g01405 258 SUPERFAMILY Barwin-like endoglucanases 18 181 IPR036908 -
Cla08g01405 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Cla08g01405 258 Gene3D - 163 258 IPR036749 -
Cla08g01405 258 PANTHER EXPANSIN-A15 11 257 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cla08g01405 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cla08g01405 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00282 Cla-Chr7:3097409 Cla08g01405 Cla-Chr8:26945619 2.06E-25 dispersed
Cla07g00284 Cla-Chr7:3123320 Cla08g01405 Cla-Chr8:26945619 7.09E-38 dispersed
Cla08g01405 Cla-Chr8:26945619 Cla11g00546 Cla-Chr11:6206278 1.29E-115 dispersed
Cla10g00645 Cla-Chr10:9839331 Cla08g01405 Cla-Chr8:26945619 1.35E-93 dispersed
Cla08g01405 Cla-Chr8:26945619 Cla05g02431 Cla-Chr5:35815273 1.57E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01405 - - csv:101216569 512.301