Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01406 ATGGAGAAACCAAAAACCAGTTGCTCACTGCTTCAATCACTTGCTTTCTCCTTCTCCTTCCTCGCCGTCTTTGTTTTGAATGCGCATGCTCAGAGTCTCCCACCTGCAAAATTCGACGGTTTCGTATACGGAAATCACTCACAGGACTTGGATACGATTCTCATCGAGGCGTTTTTTGATCCGGTTTGCCCCGATAGCAGAGACTCTTGGCCGCCTCTCAAGAAGGCCCTCGATCATTACGGCTCTCGCGTTCGCCTCGTCATTCACCTCCTCCCTCTACCTTATCATGACAATGCATATGCAGCATCTCGTGCTCTACATATTGTCGATTTGGTGAATCCCTCGGATACATTCAAATTGTTGGAAGCATTCTTCGAGCATCAGAAGCAGTTTTACAATGCCGAAACTCGTTATTTGTCAAGGGCTTCTGTTGTGGATAACATTGTGAAATTCGGAGTTGAAGTACTTGGGAACTCCTACAAAAACTATCTAGTAGCTGGCTTCAATGACAGAGACACCGATCTTTTGACACGTGTTTCTTTCAAGTTTAGCACCTCAAGAGGCGTCTATGGAACACCTTTTTTCTTTATAAATGGATTCCTAGCTCCTGATAAAGGATCTCCCATAAATTACACTGGATGGAGAAACTTGATCGACCCTTTGATCAAGAACAATAAGAGATCAGGAAATATAGCTCACTGGCTTAGTTATTTCATATGGAGCTTTCCTATTCACTCAGCTGCTCTTCCTCCTTCTTCTTCCCATCTCCACCCCATGATGCAGACCTTCAATATCTCAAGAAATCAAAATCAAGCCGACTTAGCTTTCTTCCAAAACCGAGCTGATCGATCCAACGTCCAGTTGGACTCACGGTCTTTAAGTAATATCTATCTGGAGGTGGCATGTTCGAATCTTCGATTTTTGAGTAATATTCTTGCATATTCGAATTTTCGGGTGAGCTTACTTAAGAGTGAGCTGATTGGGCTTCTTAAGCCAGAAAAAGATGGTGGATGGGATGCTTATCAGTTCGTCTATGGAAGACCAAAACCAACCGAGGCATTGCCAAACCGATTGATTGACTTTGGTTTCGATTAG 1095 43.56 MEKPKTSCSLLQSLAFSFSFLAVFVLNAHAQSLPPAKFDGFVYGNHSQDLDTILIEAFFDPVCPDSRDSWPPLKKALDHYGSRVRLVIHLLPLPYHDNAYAASRALHIVDLVNPSDTFKLLEAFFEHQKQFYNAETRYLSRASVVDNIVKFGVEVLGNSYKNYLVAGFNDRDTDLLTRVSFKFSTSRGVYGTPFFFINGFLAPDKGSPINYTGWRNLIDPLIKNNKRSGNIAHWLSYFIWSFPIHSAALPPSSSHLHPMMQTFNISRNQNQADLAFFQNRADRSNVQLDSRSLSNIYLEVACSNLRFLSNILAYSNFRVSLLKSELIGLLKPEKDGGWDAYQFVYGRPKPTEALPNRLIDFGFD 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26958988 26962383 - ClCG08G014120.1 Cla08g01406 279061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01406 364 CDD DsbA_family 55 124 - -
Cla08g01406 364 SUPERFAMILY Thioredoxin-like 22 199 IPR036249 -
Cla08g01406 364 Gene3D Glutaredoxin 45 218 - -
Cla08g01406 364 PANTHER OS09G0542200 PROTEIN 16 228 - -
Cla08g01406 364 Pfam Thioredoxin 52 219 IPR012336 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01406 - - - cmo:103488395 402.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g01603 Cla08g01406 CCT
Cla05g01603 Cla08g01406 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g177 Blo01g01610 Blo12g00876 . Bda03g00296 . Bpe04g00256 Bma04g00257 Bma01g02384 . . Cma01g01987 Cma09g00089 Car01g01558 . . Cpe06g00052 . . . . . . . . Cla08g01406 Cam08g1886 Cec08g1463 Cco08g1596 Clacu08g1578 . Cre08g1361 . Cone7ag1910 . . Lsi04g01771 . Chy04g00397 . . . . . . . . . . Cmo01g02045 Cmo09g00087 . . . Car09g00077 . Cpe02g00058 . . . . . . . Cla05g01603 Cam05g1716 Cec05g1717 Cco05g1777 Clacu05g1705 Cmu05g1592 Cre05g1711 Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012323 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 29