Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01409 ATGAGTGCGTCCAGGTTTATAAAGTGCGTCACGGTTGGTGATGGTGCTGTGGGTAAAACTTGTATGTTGATTTCCTATACGAGTAACACCTTCCCCACGCTTTACCTTTGCCTAGTTTTAAGTGTGTGTTTTATCAAAACATTGAACAAAGTTTACATTGAGCTTCAGAATTTTCTTAGCCTTTACTACATGAATGGAACTTTTCATCTCCTGAAACCTCCCATTAGCACTTCCATTTCTAATTTCTCGGCACCTATGGATCTTTCTAATTTGCAGGACTACGTGCCTACCGTTTTTGACAATTTCAGCGCCAATGTGGTGGTTGATGGAAGCACGGTCAACCTAGGATTATGGGATACTGCTGGTCAAGAGGATTACAATAGATTAAGACCACTGAGCTATAGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGATTCCTGAATTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGATCTTCGGGATGACAAGCAGTTCTTTGAAAACCACCCTGGTGCAGTTCCCATTTCCACTGTTCAGGGAGAGGAGTTGAGAAAAGTTATCGGAGCCCCGGCATACATCGAGTGTAGTTCAAAAACCCAGCAGGCATGGCACCTATCTAATGTGAAAGGAGTTTTCGATGCAGCCATTAAAGTGGTGCTGCAGCCGCCAAAGTCTAAGAAGAAGAAGAAGAAGTCACAGAATGTCTGTTCCATCTTATGA 786 42.49 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTLYLCLVLSVCFIKTLNKVYIELQNFLSLYYMNGTFHLLKPPISTSISNFSAPMDLSNLQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFENHPGAVPISTVQGEELRKVIGAPAYIECSSKTQQAWHLSNVKGVFDAAIKVVLQPPKSKKKKKKSQNVCSIL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26972204 26974963 - ClCG08G014150.2 Cla08g01409 279064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01409 261 CDD Rop_like 6 242 - -
Cla08g01409 261 ProSiteProfiles small GTPase Rho family profile. 1 241 - -
Cla08g01409 261 ProSiteProfiles small GTPase Ras family profile. 2 261 IPR001806 GO:0003924|GO:0005525
Cla08g01409 261 PANTHER RHO FAMILY GTPASE 92 261 IPR003578 GO:0005525|GO:0007264
Cla08g01409 261 PANTHER RHO FAMILY GTPASE 1 40 IPR003578 GO:0005525|GO:0007264
Cla08g01409 261 TIGRFAM small_GTP: small GTP-binding protein domain 93 191 IPR005225 GO:0005525
Cla08g01409 261 SMART rho_sub_3 9 244 IPR001806 GO:0003924|GO:0005525
Cla08g01409 261 SMART rab_sub_5 7 244 - -
Cla08g01409 261 SMART ras_sub_4 91 244 - -
Cla08g01409 261 Pfam Ras family 92 241 IPR001806 GO:0003924|GO:0005525
Cla08g01409 261 Pfam Ras family 8 36 IPR001806 GO:0003924|GO:0005525
Cla08g01409 261 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC1 92 261 - -
Cla08g01409 261 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC1 1 40 - -
Cla08g01409 261 Gene3D - 5 256 IPR027417 -
Cla08g01409 261 ProSiteProfiles small GTPase Rab1 family profile. 2 261 - -
Cla08g01409 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 248 IPR027417 -
Cla08g01409 261 PRINTS Transforming protein P21 ras signature 7 28 - -
Cla08g01409 261 PRINTS Transforming protein P21 ras signature 168 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01409 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101216083 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01646 Cla-Chr6:29980366 Cla08g01409 Cla-Chr8:26972204 6.11E-101 dispersed
Cla08g01409 Cla-Chr8:26972204 Cla10g00060 Cla-Chr10:650463 9.65E-96 dispersed
Cla08g01409 Cla-Chr8:26972204 Cla06g00868 Cla-Chr6:13256246 3.14E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272