Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01415 ATGGAGAACGGCAGTCCAGTGCTGTGTCCAAACACGGTGACGGTTCGGAGAAACCCTCACCGGAGAGCAAGAGCTACACCGGCTGCCAAAACAGCCGAATCCAATCCTCCATCTGCCATTTCTTCATTTCCACTTCAAGAAATACTTGCGATGGAAGTCCCTCAAAACCCTAAAGACAATTCATCATCATCCGTTCAAACTCCCCTCTCCGAAAACCTGAAAGTGTACCTTAGAGTTCGGCCTTTGCAACTGAAGAATTTGAAGAAGTCCGGAAATCCTGGCGATCAAAATTCAAGGTTAGGACATGTATGGCCTCAGAACCCTCAAAAGAAGAAAGTAGCGAAGGAGAAGATTGTTAAGAAGAAGAGCACTGAGGCTTGTATAACGATTAATGACGATCACTCAGTAACAGTCTGTCCCCCTATGGCATTGCAAGAGACTAGGCGGAGTAAGTCTGAGGTTTACGAAGGATTTTCCCATGTGTTTTCTACGGAATCTTCTCAGGGTGAGGTGTATGAAAGGATGGTTAGTCCTTTAGTGGAGGATTTTCTAAAGGGCAAAAGTGGAATGCTGACTGCACTCGGTCCGAGCGGCTCGGGTAAGACGCATACCATTTTTGGTAGTCCAAGAGTTCCTGGTATGGTTCCACTGGCTCTTCAACATATTTTCCGGACAGAGTCGAATGATTCTCGGTCCTCCAGATCATATTATTTATCAATCTTTGAAATATACTCAGAGAAAGGAAAAGGAGAAAAGATGTACGATCTTTCAGCAGATGGGGGTGAGTTAACTATGCAGCAGTTCACTATAAAGGGCCTTAAAGAGGTTTTAATTTCTAATGCCAGAGAAGCTGAATCATTAGTGGCTTGTGCAATGGCTAAGCGTGCCACTGCAATTACGAATGCAAATAGCACATCAAGCCGGTCTCAGTGCATCATAAACGTGCGCAGAGTTGCTAACCCAGATGAAGTCAACGATGCATCGAACTGTGCCATCTTGACCATTGCTGATCTCGCTGGAGCTGAAAAAGAAAAAAGAACTGGGAATCAGGGGACAAGATTACTTGAAGCTAACTTCATCAATAATACATCAATGGTGTTTGGCTTGTGCCTAAGATCATTGTTTGAACACCAAAGGAATCCAAAGAAGCCACTGCAGAAGCATTTCCAGAACTCTTTGTTGACCAAGTACCTTCGAGATTACCTGGAAGGAAAGAAGCGAATGACCTTGATTTTAACTGTGAAAGCAGGAGAAGAAGATTATCTTGATACAACTTTCCTTCTCAGACAAGCTTCACCTTATATGAAAATCAAGTTCAACAATGTTGTGGAACCATCCAACACCAACAAGAGACAATTGCCAACGTTATGTACATTTGAGGAGCAGAAAAGAACAAAATATAGTGTTCCTGAACCTTGTGTGAATGAAGGAAAGGGACATCATGAGGAAGGCGTGCTTTCACATGAAGAGCCTTCAGGTCATACTGAGCGTCCAGCTACAAAGTCCAGCCATACGGAATTGGCTGGGACTGAAAGAAACCATTTGATTATGCAAAATTTTGCTAAAGCCATATGGCAAGTCTTGAAGCAGTATAGAGATAAATTAAAGAGTGCAGAGAATGAAAATCAAACTCTTCAAGAAGAAATTAGGAAGGAAAAGATGAGATATTTTGAGCTGGAAAAGCAATGGCAAAGTTCAAGATGTAGTACTTGCTCCAAGGAAGATTGCGCCAAAGCTGATTCATCCATCGTTACAAGTTTTGAGTTAAAAAGTGATCTGGATGAGTACAGATTCAATGATGTTCACGAGATAAATCTGAACTCTTTCATCAAAGTGAAGGAGTCTGAGGGATATGAATCTCCAGAAAGACGTGGTTTCTCTCCCTGTGAAGACATAAATAGTTGCTCCAAACTTGTTGAAGTTAAAGAAGCACGTAAAAATAAAGTAGACGAGACCACTCCTAGGAATGAGTGCGACACAGCAAAAAAACTTATGTATGTGGAAGCAGATGATCGTTGTCTGACGACAAATCCTATAGGTAATACATGTTTTCTCCTTCTTTTCGAATTAGCCTTTGGCACCCTGCAGTCCCATAACTTGGTGAAGCATGACAGCTGTTCATCGGTAGAGCTGGACAAACTCAGTGAGCAAGATGAGGAATCTACCTCAGTTGAATCACCTTTACAAGTAGCTTCGTTTATTCACTGCAATGCTCATGCATGCGAAACTCAACCTGTACTTGATTCTTCATTAAACCAATCAACTTCAGAGGAGTCTGATAGGTCAGTTAATGAACGTTTGGATTCTCGACATATACCTCCCACCAAGGATGTTGAATCTTGTCAAGAACACAACATTGATGTGCATTGCAGTGATCCAAGCACTGACACCTCATGCAAACGAGAGAAACCAAAAAGGTTAGAGAGACTTTTGCCCGCATCATCCACATTATTGAGGGATTTCAGCAATATGCATGTTGAGGATGATATTGAGGGGTCAAAGGTCTGTCCTGATCTAATTTTGTTCACACTTCTTTTTGCTTATCAGCAGGTAAACAGAAATGGGAAAAAATCAGCCAAAGGTGAAAAAATTAGAACACAGGGTAACATCTCCCTCATTCGCATGCTGAAGAGTAATCTCCGGTTCTACAAAGTTCCTTATCTCACCTCTTCTCCTCCTGTTAGGTTTAATCTTACATCCATATTTAAACTTGCACATCTTAGGCACCTAAGAAGAATCATCTTTGGAATGTGTCTTGATTCTGAAAATTTGGTTTGA 2778 41.72 MENGSPVLCPNTVTVRRNPHRRARATPAAKTAESNPPSAISSFPLQEILAMEVPQNPKDNSSSSVQTPLSENLKVYLRVRPLQLKNLKKSGNPGDQNSRLGHVWPQNPQKKKVAKEKIVKKKSTEACITINDDHSVTVCPPMALQETRRSKSEVYEGFSHVFSTESSQGEVYERMVSPLVEDFLKGKSGMLTALGPSGSGKTHTIFGSPRVPGMVPLALQHIFRTESNDSRSSRSYYLSIFEIYSEKGKGEKMYDLSADGGELTMQQFTIKGLKEVLISNAREAESLVACAMAKRATAITNANSTSSRSQCIINVRRVANPDEVNDASNCAILTIADLAGAEKEKRTGNQGTRLLEANFINNTSMVFGLCLRSLFEHQRNPKKPLQKHFQNSLLTKYLRDYLEGKKRMTLILTVKAGEEDYLDTTFLLRQASPYMKIKFNNVVEPSNTNKRQLPTLCTFEEQKRTKYSVPEPCVNEGKGHHEEGVLSHEEPSGHTERPATKSSHTELAGTERNHLIMQNFAKAIWQVLKQYRDKLKSAENENQTLQEEIRKEKMRYFELEKQWQSSRCSTCSKEDCAKADSSIVTSFELKSDLDEYRFNDVHEINLNSFIKVKESEGYESPERRGFSPCEDINSCSKLVEVKEARKNKVDETTPRNECDTAKKLMYVEADDRCLTTNPIGNTCFLLLFELAFGTLQSHNLVKHDSCSSVELDKLSEQDEESTSVESPLQVASFIHCNAHACETQPVLDSSLNQSTSEESDRSVNERLDSRHIPPTKDVESCQEHNIDVHCSDPSTDTSCKREKPKRLERLLPASSTLLRDFSNMHVEDDIEGSKVCPDLILFTLLFAYQQVNRNGKKSAKGEKIRTQGNISLIRMLKSNLRFYKVPYLTSSPPVRFNLTSIFKLAHLRHLRRIIFGMCLDSENLV 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27016248 27026499 + ClCG08G014220.2 Cla08g01415 279070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01415 925 PANTHER KINESIN-RELATED 68 778 IPR027640 GO:0003777|GO:0007018
Cla08g01415 925 ProSiteProfiles Kinesin motor domain profile. 72 437 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01415 925 MobiDBLite consensus disorder prediction 87 113 - -
Cla08g01415 925 MobiDBLite consensus disorder prediction 89 104 - -
Cla08g01415 925 SMART kinesin_4 70 445 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01415 925 Coils Coil 528 562 - -
Cla08g01415 925 MobiDBLite consensus disorder prediction 1 41 - -
Cla08g01415 925 MobiDBLite consensus disorder prediction 759 778 - -
Cla08g01415 925 MobiDBLite consensus disorder prediction 470 507 - -
Cla08g01415 925 Gene3D Kinesin motor domain 68 469 IPR036961 -
Cla08g01415 925 PRINTS Kinesin heavy chain signature 387 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01415 925 PRINTS Kinesin heavy chain signature 332 350 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01415 925 PRINTS Kinesin heavy chain signature 300 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01415 925 PRINTS Kinesin heavy chain signature 186 207 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01415 925 MobiDBLite consensus disorder prediction 475 501 - -
Cla08g01415 925 MobiDBLite consensus disorder prediction 748 778 - -
Cla08g01415 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 438 IPR027417 -
Cla08g01415 925 PANTHER KINESIN-LIKE PROTEIN KIF23 68 778 - -
Cla08g01415 925 Pfam Kinesin motor domain 143 432 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01415 K10401 KIF18_19; kinesin family member 18/19 - csv:101210482 1404.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01415 Cla-Chr8:27016248 Cla03g01570 Cla-Chr3:31475887 2.98E-26 dispersed
Cla08g01415 Cla-Chr8:27016248 Cla04g00837 Cla-Chr4:23397228 7.05E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1139 . . . . . . . . . . . . . . . . . Bhi04g00138 . . . Hepe10g0163 . . Cla08g01415 Cam08g1894 Cec08g1471 Cco08g1604 Clacu08g1586 . Cre08g1369 . . . Cone20ag0437 . . . Cme03g01871 Blo17g00740 . Bda08g01213 . . Bpe05g00146 . . . . . Cma12g00402 . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g01310 Csa02g02143 Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005587 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 37