Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01416 ATGGGATTTCTACAAACATATTTTCTTTCTCCTTCTTCTGTTTTGTTTCACTCTGTGCTTTTGATCATCTTCTTTAGAGGCGTTTCTGGAGCTGGATTTACATTTGTAAATAGATGTGATTACACTGTTTGGCCGGGAATTCTTGGAAACACCCAATTGGAATCCACTGGATTCGAGCTCTCTCCGGGGGCGGAGCGTTCCTTCCACGCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGTCGAACCGGCTGTTTGTTCGACCCTGCCACTGGTCAGGGCAGTTGTCAAACGGCTGATTGTGCATCAAACCAAATCGAATGCAATGGCGCCGGAGCTACCCCGCCGGCGACCCTAGCCGAGTTTACGATCGGCGGTGGTGCCGGCGCGCAGGACTTTTACGATGTCAGCTTGGTCGACGGCTACAACATTCCGATGGTGGTGGATGCCACTGGTGGGAGTGGCGCGTGTCAGTCGACTGGGTGCGCGGCGGAGCTGAGCCGGCGGTGCCCTGCGGAACTACGGGCTGGCGAGGGAAAGGCGTGTAGAAGCGCGTGTGAAGCGTTTGGGAACCCGGAATACTGCTGCAGCGGCGCGTATAACTCACCCGCTGCCTGTAAGCCGTCGATGTACTCGGAAATGTTCAAATCGGCTTGCCCGAAATCGTATAGCTACGCCTTTGATGACGCAACAAGCACTTTTACTTGTAGTGGAGCAGATTATACCATTACATTCTGCCCTTCATCAACAAGCCAAAAATCGGAAAGAGATCCGTCGAGCCGAGGTGATGGACCGTTGGTGTCGTTCGACAGTTCATGGCTGCCGGACTTTATTACCGGAGAAGGATCATCCAAAACAATGTTTTTGTCTTCAACTTTGAATTCAACATTGTTTCTTCTTATTTTTTTCATTTTCTTTTTTCATTAG 924 51.41 MGFLQTYFLSPSSVLFHSVLLIIFFRGVSGAGFTFVNRCDYTVWPGILGNTQLESTGFELSPGAERSFHAPPGWSGRFWGRTGCLFDPATGQGSCQTADCASNQIECNGAGATPPATLAEFTIGGGAGAQDFYDVSLVDGYNIPMVVDATGGSGACQSTGCAAELSRRCPAELRAGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSMYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSTSQKSERDPSSRGDGPLVSFDSSWLPDFITGEGSSKTMFLSSTLNSTLFLLIFFIFFFH 307
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 27028798 27030501 - ClCG08G014230.2 Cla08g01416 279071
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01416 307 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 14 263 - -
Cla08g01416 307 CDD TLP-PA 33 245 - -
Cla08g01416 307 ProSiteProfiles Thaumatin family profile. 30 246 IPR001938 -
Cla08g01416 307 SUPERFAMILY Osmotin, thaumatin-like protein 33 247 IPR037176 -
Cla08g01416 307 Gene3D Thaumatin 31 246 IPR037176 -
Cla08g01416 307 PANTHER OS03G0233200 PROTEIN 14 263 IPR001938 -
Cla08g01416 307 SMART tha2 33 246 IPR001938 -
Cla08g01416 307 Pfam Thaumatin family 37 246 IPR001938 -
Cla08g01416 307 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Cla08g01416 307 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Cla08g01416 307 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Cla08g01416 307 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Cla08g01416 307 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla05g01863 Cla08g01416 CCT
Cla05g01863 Cla08g01416 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01416 Cla-Chr8:27028798 Cla10g00071 Cla-Chr10:737763 7.22E-125 dispersed
Cla08g01416 Cla-Chr8:27028798 Cla08g01417 Cla-Chr8:27043614 2.60E-93 tandem
Cla01g01986 Cla-Chr1:34501575 Cla08g01416 Cla-Chr8:27028798 2.55E-77 wgd
Cla05g01863 Cla-Chr5:30508879 Cla08g01416 Cla-Chr8:27028798 8.97E-94 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01416 - - csv:101204331 564.688