Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01417 ATGGCGGCGGACGGATTTCAATTTCTATTGGGGCTCTTAAGTCTGCTGCTTTTGGTACCAGGTGGGTTTTCGACGAGCTTTACTTTTGTGAACAAATGTGGATTCACGGTTTGGCCGGGGGTTCTGTCGAACGGTGGCGTTCCACCGCTTCCCACTACTGGCTTCTCTCTTCAGACTGGAGAGTCCAAGACACTACCGGCGCCGGCGTCTTGGGGCGGGCGTTTCTGGGGGCGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGCGCTACTGGCGACTGTGGCTCTAACAAACTAGAGTGTGCTGGAAACGGAGCAACGCCACCGGCGACTCTCGCGGAGTTCACCCTCGACGGCTCCGGCGGGCTTGATTTCTTCGACGTTAGTCTGGTGGACGGTTACAATCTTCCGATGATTGTGGTGCCTCAGGGTGGTTCCGGCGACAACTGCACGAGCACCGGCTGCGTGGTGGATCTGAACGGCGCGTGTCCATCAGAGTTGCGCGTGACGAGTGCCGACGGAAGAGAAGGCGTGGCGTGTAAAAGCGCGTGTGATGCCTTCAATCAACCGCAGTATTGTTGCACAGGCGCGTACCAAACACCGGATACTTGTCAGCCATCGATGTACTCTCAGATCTTCAAGAGAGCGTGCCCACGCGCTTACAGCTACGCGTACGATGATAAGACGAGTACTTTCACATGCGCTAGTGCTGATTACGTCATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCCTCGGAGGCACAGAATTTACCTGCGACGGCGAACCCATCTTCCGGCGGCGATGGTGCGATGGTGTACGAAGGTGCATCCCTAATTCAAACCGACTCAGCGCCACCGCGCTTACCCGGGATTTCGGCGGTCGGTGCGGTGGCGATTTGGTGGTTGTGGCAGCTGTTCTTCTACTTCTGA 942 56.37 MAADGFQFLLGLLSLLLLVPGGFSTSFTFVNKCGFTVWPGVLSNGGVPPLPTTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNLPATANPSSGGDGAMVYEGASLIQTDSAPPRLPGISAVGAVAIWWLWQLFFYF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27043614 27045802 - ClCG08G014240.1 Cla08g01417 279072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01417 313 Gene3D Thaumatin 25 247 IPR037176 -
Cla08g01417 313 CDD TLP-PA 26 246 - -
Cla08g01417 313 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Cla08g01417 313 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cla08g01417 313 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cla08g01417 313 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cla08g01417 313 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cla08g01417 313 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cla08g01417 313 PANTHER BNAA02G17480D PROTEIN 18 272 - -
Cla08g01417 313 Pfam Thaumatin family 31 247 IPR001938 -
Cla08g01417 313 SMART tha2 27 247 IPR001938 -
Cla08g01417 313 PANTHER OS03G0233200 PROTEIN 18 272 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01863 Cla-Chr5:30508879 Cla08g01417 Cla-Chr8:27043614 2.06E-154 dispersed
Cla05g02479 Cla-Chr5:36192400 Cla08g01417 Cla-Chr8:27043614 1.18E-90 dispersed
Cla08g01417 Cla-Chr8:27043614 Cla10g00072 Cla-Chr10:750528 4.00E-112 dispersed
Cla08g01416 Cla-Chr8:27028798 Cla08g01417 Cla-Chr8:27043614 2.60E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01417 - - csv:101204094 600.512