Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01419 ATGACCGTGAAATTTAGATCAGACGGTGAGTTGAAGAAACGATGGCCCTCAAATTTCGGGGTTTCTCTGTCTTATAATGGCCACTCTCGCCTTCATCTTCTTCGCGTCGATCCATTTTCATCGATACACGAAGAAGAAGAACGACAAGAAGCCTTCCTCTCTTCCATTTCCTTACAACAAGACACCATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGCGATCCTTCCTCCGATCTTCAATTGGAGAGGATTAATGTCTATTACAACGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAACCGGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGTCAGTCCGGTGCCGGAAATAATTGGGCTAAAGGTCATTATACCGAAGGAGCCGAGTTGATCGATTCCGTTCTTGATGTTGTTCGTAAGGAAGCTGAGAATTGTGATTGCTTGCAAGGTTTCCAGGTTTGTCACTCCCTTGGAGGAGGCACTGGTTCTGGCATGGGAACCCTCTTGATATCGAAGATTAGAGAGGAATATCCGGACAGGATGATGCTCACATTCTCGGTTTTCCCTTCTCCTAAGGTCTCAGACACGGTTGTGGAACCATATAATGCCACTCTTTCAGTTCACCAATTGGTTGAGAATGCGGATGAATGTATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGGACCTTAAAGCTCAGCACTCCTAGCTTTGGTGACCTTAACCATTTGATCTCTGCAACCATGAGTGGAGTAACATGTTGCTTGAGATTCCCAGGTCAACTGAACTCAGACTTGAGAAAATTGGCAGTGAATCTAATCCCATTTCCCCGTCTTCACTTTTTCATGGTTGGATTTGCACCTTTGACCTCCCGTGGCTCCCAGCAGTACATCTCCCTCACCGTCCCAGAGCTGACTCAGCAAATGTGGGACGCCAAGAACATGATGTGCGCGGCCGACCCCCGCCACGGCCGCTACCTGACCGCCTCCGCCATGTTCAGAGGAAGAATGAGCACTAAAGAAGTAGACGAACAAATGATCAATGTACAAAACAAAAACTCGTCCTACTTCGTGGAATGGATCCCCAACAACGTGAAGTCAAGCGTTTGTGACATTCCTCCAAAGGGCTTGAAAATGGCTTCCACATTCGTGGGAAACTCGACCTCGATTCAGGAAATGTTTAGAAGAGTGAGTGAGCAGTTCACAGCCATGTTTAGGCGTAAAGCTTTTCTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTTACGGAAGCAGAGAGTAATATGAATGATTTGGTGGCTGAGTATCAGCAATATCAGGATGCTACTGTTGATGATGATGCTGATTTTGAGGATCATGAAGAAGAGTATGCCGATCAGTAA 1533 46.71 MTVKFRSDGELKKRWPSNFGVSLSYNGHSRLHLLRVDPFSSIHEEEERQEAFLSSISLQQDTMREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDDADFEDHEEEYADQ 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27071877 27075821 + ClCG08G014260.1 Cla08g01419 279074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01419 510 PANTHER TUBULIN BETA-1 CHAIN-RELATED 63 505 - -
Cla08g01419 510 CDD beta_tubulin 64 490 - -
Cla08g01419 510 Pfam Tubulin/FtsZ family, GTPase domain 65 275 IPR003008 GO:0005525
Cla08g01419 510 Pfam Tubulin C-terminal domain 325 446 IPR018316 -
Cla08g01419 510 SUPERFAMILY Tubulin C-terminal domain-like 308 493 IPR008280 -
Cla08g01419 510 PANTHER TUBULIN 63 505 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 Coils Coil 472 492 - -
Cla08g01419 510 SMART Tubulin_C_4 310 447 IPR018316 -
Cla08g01419 510 Gene3D Helix hairpin bin 438 494 IPR023123 -
Cla08g01419 510 SUPERFAMILY Tubulin nucleotide-binding domain-like 63 307 IPR036525 -
Cla08g01419 510 Gene3D Tubulin/FtsZ, GTPase domain 63 326 IPR036525 -
Cla08g01419 510 PRINTS Beta-tubulin signature 152 163 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 411 434 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 329 345 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 441 452 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 172 190 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 276 288 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 105 122 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 294 303 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 375 393 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 476 494 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 309 322 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 216 228 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Beta-tubulin signature 393 407 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 204 210 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cla08g01419 510 Gene3D - 327 437 IPR037103 -
Cla08g01419 510 SMART Tubulin_4 111 308 IPR003008 GO:0005525
Cla08g01419 510 PRINTS Tubulin signature 434 462 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 115 134 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 157 168 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 240 253 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 215 236 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 72 92 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 254 274 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 170 194 IPR000217 GO:0005874|GO:0007017
Cla08g01419 510 PRINTS Tubulin signature 196 214 IPR000217 GO:0005874|GO:0007017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01419 K07375 TUBB; tubulin beta - csv:101204817 877.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00774 Cla-Chr3:9425077 Cla08g01419 Cla-Chr8:27071877 0 dispersed
Cla03g01196 Cla-Chr3:25279428 Cla08g01419 Cla-Chr8:27071877 0 dispersed
Cla04g00730 Cla-Chr4:22318421 Cla08g01419 Cla-Chr8:27071877 9.14E-10 dispersed
Cla04g01048 Cla-Chr4:25669968 Cla08g01419 Cla-Chr8:27071877 0 dispersed
Cla08g01419 Cla-Chr8:27071877 Cla10g00961 Cla-Chr10:22603977 2.72E-119 dispersed
Cla10g01281 Cla-Chr10:27640563 Cla08g01419 Cla-Chr8:27071877 4.38E-112 dispersed
Cla08g01419 Cla-Chr8:27071877 Cla10g02057 Cla-Chr10:36298518 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220