Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01431 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACGTGAGTTTCTTATTTATTTTCTTCGTTTTGCAGCTGTCTGTTTGTTTTCTGATTCCCGATTTGAAACGAGCATATGATATTGATGAGTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTCGACGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTCCCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAGGAACATAACTTTTAA 1296 41.98 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDVSFLFIFFVLQLSVCFLIPDLKRAYDIDESEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYAEERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRIFPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27149914 27154235 + ClCG08G014380.2 Cla08g01431 279086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01431 431 SUPERFAMILY E2F-DP heterodimerization region 252 355 IPR037241 -
Cla08g01431 431 Pfam E2F/DP family winged-helix DNA-binding domain 177 240 IPR003316 GO:0005667|GO:0006355
Cla08g01431 431 MobiDBLite consensus disorder prediction 124 172 - -
Cla08g01431 431 Gene3D - 247 357 - -
Cla08g01431 431 MobiDBLite consensus disorder prediction 124 143 - -
Cla08g01431 431 Pfam E2F transcription factor CC-MB domain 256 355 IPR032198 GO:0046983
Cla08g01431 431 PANTHER TRANSCRIPTION FACTOR E2FC 48 428 - -
Cla08g01431 431 Gene3D - 170 242 IPR036388 -
Cla08g01431 431 SUPERFAMILY Winged helix DNA-binding domain 175 238 IPR036390 -
Cla08g01431 431 PANTHER TRANSCRIPTION FACTOR E2F 48 428 IPR015633 GO:0000978|GO:0006357
Cla08g01431 431 Coils Coil 263 294 - -
Cla08g01431 431 SMART E2F_TDP_2 175 240 IPR003316 GO:0005667|GO:0006355
Cla08g01431 431 CDD E2F_DD 251 355 IPR032198 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02172 Cla-Chr2:36787330 Cla08g01431 Cla-Chr8:27149914 4.29E-70 dispersed
Cla06g01632 Cla-Chr6:29848864 Cla08g01431 Cla-Chr8:27149914 2.66E-09 dispersed
Cla08g01431 Cla-Chr8:27149914 Cla01g01399 Cla-Chr1:28423998 9.27E-08 dispersed
Cla08g01431 Cla-Chr8:27149914 Cla04g01021 Cla-Chr4:25311946 5.84E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61596 PF16421 E2F_CC-MB 1.80E-26 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01431 K06620 - csv:101211469 668.307