Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01431 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACGTGAGTTTCTTATTTATTTTCTTCGTTTTGCAGCTGTCTGTTTGTTTTCTGATTCCCGATTTGAAACGAGCATATGATATTGATGAGTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTCGACGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTCCCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAGGAACATAACTTTTAA 1296 41.98 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDVSFLFIFFVLQLSVCFLIPDLKRAYDIDESEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYAEERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRIFPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27149914 27154235 + ClCG08G014380.2 Cla08g01431 279086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01431 431 SUPERFAMILY E2F-DP heterodimerization region 252 355 IPR037241 -
Cla08g01431 431 Pfam E2F/DP family winged-helix DNA-binding domain 177 240 IPR003316 GO:0005667|GO:0006355
Cla08g01431 431 MobiDBLite consensus disorder prediction 124 172 - -
Cla08g01431 431 Gene3D - 247 357 - -
Cla08g01431 431 MobiDBLite consensus disorder prediction 124 143 - -
Cla08g01431 431 Pfam E2F transcription factor CC-MB domain 256 355 IPR032198 GO:0046983
Cla08g01431 431 PANTHER TRANSCRIPTION FACTOR E2FC 48 428 - -
Cla08g01431 431 Gene3D - 170 242 IPR036388 -
Cla08g01431 431 SUPERFAMILY Winged helix DNA-binding domain 175 238 IPR036390 -
Cla08g01431 431 PANTHER TRANSCRIPTION FACTOR E2F 48 428 IPR015633 GO:0000978|GO:0006357
Cla08g01431 431 Coils Coil 263 294 - -
Cla08g01431 431 SMART E2F_TDP_2 175 240 IPR003316 GO:0005667|GO:0006355
Cla08g01431 431 CDD E2F_DD 251 355 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01431 K06620 E2F3; transcription factor E2F3 - csv:101211469 668.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02172 Cla-Chr2:36787330 Cla08g01431 Cla-Chr8:27149914 4.29E-70 dispersed
Cla06g01632 Cla-Chr6:29848864 Cla08g01431 Cla-Chr8:27149914 2.66E-09 dispersed
Cla08g01431 Cla-Chr8:27149914 Cla01g01399 Cla-Chr1:28423998 9.27E-08 dispersed
Cla08g01431 Cla-Chr8:27149914 Cla04g01021 Cla-Chr4:25311946 5.84E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01399 CCT 591 948 E2F-DP Transcription Factor Family AT3G48160 56.4 1.1e-102 370.5
Cla02g02172 . 10 466 E2F-DP Transcription Factor Family AT5G22220 50.4 1.6e-100 363.6
Cla04g01021 . 138 525 E2F-DP Transcription Factor Family AT5G22220 52.9 1.8e-91 333.6
Cla08g01431 . 171 425 E2F-DP Transcription Factor Family AT1G47870 54.5 4.9e-66 248.8
Cla02g02172 . 10 466 E2F-DP Transcription Factor Family AT5G22220 50.4 1.6e-100 363.6
Cla04g01021 . 138 525 E2F-DP Transcription Factor Family AT5G22220 52.9 1.8e-91 333.6
Cla08g01431 . 171 425 E2F-DP Transcription Factor Family AT1G47870 54.5 4.9e-66 248.8
Cla01g01399 CCT 591 948 E2F-DP Transcription Factor Family AT3G48160 56.4 1.1e-102 370.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61596 PF16421 E2F_CC-MB 1.80E-26 No_clan Cla TF