Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01436 ATGGGAAGGTCTCGCTCATGCTTCCAAGTAATCACATGTGGTAGCGATTCAAAGGACGAAGATGAGATCGATGTACTTGAGAGTAAGGCGTCTAAAGACAAACGAGGCTGGAGTTTCCGTAAAAGATCTTCCCAGCATCGTGTGCTAAACAACACTGTGACCGCAGAAACTCCTCCTGTAGAGAAGGAGAACCTTGAAACTGCTACATTCGACTTCCAATCATCAGCCAACTCCACTGTTCCTGAGAAACCCACTATAATACACCTCACCAATGAGGAAACCCATGTGCCTAACATCGAGAATCCTAAAGGATCTGATAAGGTGGATGTTGCATCCGAAAATGAAAGTAAGGTCGATAGTGAGGTTCAGGAGTCTACTGTTGTTGTCATCCAGGCTGGTGTCAGGGGGCTCTTGGCACAGAAGGAGCTGATTAAACTTAAGAATGTAGTAAAGGTGCAAGCTGCTGTTCGTGGATTCTTGGTAAGGCGACATGCTGTGGGAACACTCCGTTGTGCTCAAGCCATTGTCAAAATGCAAGCTATTGTACGTGCTCGTCGTGCTCATCTCTCCCCTGAGGGATCGTCCCCAGACGAGCTGCACAACACTAATGAGAAGGAAAATCCTGGTTCGAAGATCTTGGTGAAGGGAGAGATGACAAAATCCAACTTGAGATATATTTCAATTGAAAAGCTACTTAGCAATAGTTTTGCCCGGCAGTTGTTGGAATCAACACCAAGGAACAAACCAATCAAAATCAAGTGCGTTCCTTCCAAAAATGATTCTGCTTGGAAATGGTTGGAGCGCTGGATGGCCGTTTCATCATTGGATGTCTTGGAGCCGAAGAAAGAAGAATTAGTCCCTGGTCAAATGGAAGAAGAAACTGAGGAGCCGAAGGAAGAAGAATCAGAAGAATCAGACACTGAGCAATTGAAAAGAGAAATTGAGGAATCTCATCTTGAAGATCAAATTGACTCAAAACCGTTGTCTGAAACAGAAAATTTGAACTCCAGCACCATCAAATCAGTTTCCCCATCTGAAAGTGAAGATTTAATTACTTATGATGCCAGTAACTTACAATCTCAGACCTCCAGCTCTCAATCTTCATTAGTGAAGGATAATTTGGAGCAGCCTTTGCCTGAGACTGCTAGAATGCCTGAAGCCGAAGAGAAATCAACTAAGGTTAGTTCTGTACAACATCAGAAAATACAGATGGATGGTGCAGGTTTGCAAACAGAGTCAAACACCTCCTCTGATAAACCTCAGATGGACGTGGAACAAGTCAATCCTCTGAAAAGATTAGCCCCCGAACAACTGGAGAATGAGGGTAAGAAATTTGTGCTTGGATCAAGAAAGGTGAACAATCCCTCATTTATCAATGCCCAGGCAAAATTTGAACAGTTGAGTTTGGCACCAGATTCAATTGGAACAATTAGTTCAATGCATCAAGATGATGGAATTGAATCTCATTCAGAAACAGTATCATCTACAGCGGATACTGTACCCAGGACGAAGGAGTCAAGTGCAGAGGAAAATGTTGTTCTTCCTGCATCTAGGATAACTCAAGTTGGTGGCTCTGAATGTGGCACCGAGCTCTCTATTTCTTCCACCCTTGATTCACCTGATATATCTGAAGCAGGAGTGGCAGATCCACATGCAAATGATGTTTCAAAGAAAGGAGTCCAAGATCCTAGCAGTGACCTAAGCGTAGAAGCTGAAATCAAGGCTTCTACTAATCCAATGCAAAATGACATTCAACTTCCTGTGGATCAACCAGAAGAAGCTGGTGAATCTAACGGTCATTCCATCACTTCAGTAGCTGTTGTAGACTCTGCCCCAAGTGAATCAAAGCTAGAGAGGAGTTCATCAGATCAACAGAGAGAACAGGAGGCTGATACGGGTCATGATCATCCAACATATAAATCATCTCCAGAAGCTTCTCCAAGAAGTCATTTAACTGTTCCAGAATCCCAAGGAACACCTTCTAGTCAGGTATCCATAAAGGCTAAACGGGATAAATCTGATAAAACAGTCTCTTTCCTTAAGCAAAAGTCTTCATCAGCAGGAAAGAAATCACCATCCAATTTAAATCGCAATTCTGGCTCGAGGAGTAGTACAGATAATTCTTACAAAGATCAGAAGTCTGGGAAGAGAAGAAATTCATTTGAAGCACGACAGGAAAATGTTGAAAAGGAATTAAGAGAGAGCAGTAGTAGTAGCTCTCTTCCTCATTTCATGCAAGCCACAGAATCCGCTAGAGCCAAGGCCCATTCGACCAACTCACCAAGATCAAGTCCGGATGTTCAAGATGGAGAAATATACATGAAGAAAAGGCATTCCTTACCTGCTGATGGCCGGCAAGGATCTCCACGCATTCAGCAGCAAACAACTCGAACCCAGCAGGGAGCGAAGGGAAATGTTAATCAAGCCAAAAGATATGGGTCTGCTCAGGAAAGATGTGTAAATTCCCATTTCTATCTAATTGTTTTGTTTGTTATCTCTCCATTTTCCCCCACCCTTCCAAAAATTTTCCATCACCTCTATCCAGAAAATTTCCCCGACCTTATCATTTGGTACAAACCGGGGGACTATGTTTCTTCACTATTTCTTAGACCAATCTATGGCAAACCAAGAGACCTCTATTTCTTCCTCATTTCTCAGACCGATGCTTCTTTCCATTGTCTCTTCAGAACTCAACTACATCAAGCAATTGAAACTCGCTCTCAATTGGTAGAACTTATGGAGGCCAATGTCATGGATGTAGCTCTGATGATAGCGATTTACGTGAGCTTCACTCTACCAAAGAATCTTTCCCCTTATTTTGATCGGACCACCATTAAGACTCCTATGCTTTACGGGCTCCACAGAGGTTATTTGCAAATATTGGTAAGCTTCGACAATGTTCGAGGATTACGATTCAATCCAAATGACGATGTTATGCTGGAGATGTTATTAGCCAAAGAATTTGATAGCAGGAGTTGGTTATACCTAGACGAGGTGGGAGAGGACAAAGGAAGGCAATGGTTTGATCGTTTGAGTTGTTTGGACTTCAGTTTACTTGAAGTGAGGTTCCAAGTTAGGTTGTTTTTGTCTGAGGATTGTCCATCCGAAGTGGGATTGGGTGCTCAAGATCACCTTCAGGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTTTGGGTTCTGACGACACTTTGCCTCCTGGATTTGAAGTAGCTCATCCAGAGAATCAGTGGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCGCCTAAGTTTGTGCTGAATTTGATGTGGCGAGTGGTTGTTGGTGAAGAAAGCCAAGAGGTAGATGTTGAAAATCAGAGAGAGATGAGAGTACTTGAAGCGGTTTATCCTCGGGCATCTGCAATTCCTCCTAACCCTTCCGTAGTACCTGATTCAGAACGTGCCAGTGTCGATGACAGTCGGACACCTCTGATTCCCATTACTCCTGTTGAAGACGAAGATGCAACAACCGAGACCTCTGATTACGCAAGTCCTGCTGCTGTCTTTATGAGTGCACAGCCCTCCCTGTTTACTTCTGCTGGCACATCCACATCTCAACATGTTTTACTGAATGCGATGTCTTCTACTTCTAGTTTGAGTTCCATGGCTGGAATGGATCTTGGCAATGAACGTGATGTTGTAGCTGCTGCATCAGCGGCACTCAGTGCACTAGTGAAGAGCAATGAGGTAGGTAGCTCGATTGACCGCGAATTGCTTGTTAATATTCTCAACAATCCAAAAATGATTGAACAGCTGGTTGTGGATTCTGGTGCTGTCACTAGCACTCAGAAGCCAATATCGCCTCCTGACCCACCGCTTGTACCTATGCATATGTCCGAAGCCAATGCCAGCATTACACCTATATCGGGCAGTTCTTTTTATTCTCAACCAAATGGAGGGAGTGTAGGACCTATCCCCAACGCGCACCTTTCCCCAAGGGGCGTACCAGTTTCTTCCCTGCCCTCCACTGGAGCCCCAATGAAGGACTTGAATTACTATAAAAGTTTGATTCAGCAACATGGAGGGGAGAGACAAGATGATCCCCCTCGGCAGCAATTCGGGAACCGTCACAACCAGCCATCAGGCACAAACCAGGAATTCTTACAGAGCCAACCATCAAGGGATGGGAAGTTCAAGATAATGAAGCCTTGCATATATTTTAACAGCTCAAGAGGATGTCGACATGGAGCCAATTGCGCGTATCAGCATGACCCCATGTTCCAGCAGAGAAATACTAGCGTGCCCGAAATGCCTAGCTCTAAGAGAACAAAAGTTGATAGAGAAATCAGCAGTTAA 4329 44.05 MGRSRSCFQVITCGSDSKDEDEIDVLESKASKDKRGWSFRKRSSQHRVLNNTVTAETPPVEKENLETATFDFQSSANSTVPEKPTIIHLTNEETHVPNIENPKGSDKVDVASENESKVDSEVQESTVVVIQAGVRGLLAQKELIKLKNVVKVQAAVRGFLVRRHAVGTLRCAQAIVKMQAIVRARRAHLSPEGSSPDELHNTNEKENPGSKILVKGEMTKSNLRYISIEKLLSNSFARQLLESTPRNKPIKIKCVPSKNDSAWKWLERWMAVSSLDVLEPKKEELVPGQMEEETEEPKEEESEESDTEQLKREIEESHLEDQIDSKPLSETENLNSSTIKSVSPSESEDLITYDASNLQSQTSSSQSSLVKDNLEQPLPETARMPEAEEKSTKVSSVQHQKIQMDGAGLQTESNTSSDKPQMDVEQVNPLKRLAPEQLENEGKKFVLGSRKVNNPSFINAQAKFEQLSLAPDSIGTISSMHQDDGIESHSETVSSTADTVPRTKESSAEENVVLPASRITQVGGSECGTELSISSTLDSPDISEAGVADPHANDVSKKGVQDPSSDLSVEAEIKASTNPMQNDIQLPVDQPEEAGESNGHSITSVAVVDSAPSESKLERSSSDQQREQEADTGHDHPTYKSSPEASPRSHLTVPESQGTPSSQVSIKAKRDKSDKTVSFLKQKSSSAGKKSPSNLNRNSGSRSSTDNSYKDQKSGKRRNSFEARQENVEKELRESSSSSSLPHFMQATESARAKAHSTNSPRSSPDVQDGEIYMKKRHSLPADGRQGSPRIQQQTTRTQQGAKGNVNQAKRYGSAQERCVNSHFYLIVLFVISPFSPTLPKIFHHLYPENFPDLIIWYKPGDYVSSLFLRPIYGKPRDLYFFLISQTDASFHCLFRTQLHQAIETRSQLVELMEANVMDVALMIAIYVSFTLPKNLSPYFDRTTIKTPMLYGLHRGYLQILVSFDNVRGLRFNPNDDVMLEMLLAKEFDSRSWLYLDEVGEDKGRQWFDRLSCLDFSLLEVRFQVRLFLSEDCPSEVGLGAQDHLQAKASWLLHSTGLGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPKFVLNLMWRVVVGEESQEVDVENQREMRVLEAVYPRASAIPPNPSVVPDSERASVDDSRTPLIPITPVEDEDATTETSDYASPAAVFMSAQPSLFTSAGTSTSQHVLLNAMSSTSSLSSMAGMDLGNERDVVAAASAALSALVKSNEVGSSIDRELLVNILNNPKMIEQLVVDSGAVTSTQKPISPPDPPLVPMHMSEANASITPISGSSFYSQPNGGSVGPIPNAHLSPRGVPVSSLPSTGAPMKDLNYYKSLIQQHGGERQDDPPRQQFGNRHNQPSGTNQEFLQSQPSRDGKFKIMKPCIYFNSSRGCRHGANCAYQHDPMFQQRNTSVPEMPSSKRTKVDREISS 1442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27221111 27233978 - ClCG08G014420.2 Cla08g01436 279091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01436 1442 MobiDBLite consensus disorder prediction 282 424 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 769 783 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 304 327 - -
Cla08g01436 1442 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Cla08g01436 1442 MobiDBLite consensus disorder prediction 475 502 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 1134 1158 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 786 809 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 522 541 - -
Cla08g01436 1442 PANTHER PROTEIN IQ-DOMAIN 32 1 810 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 1351 1385 - -
Cla08g01436 1442 Gene3D - 121 175 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 619 638 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 596 618 - -
Cla08g01436 1442 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Cla08g01436 1442 MobiDBLite consensus disorder prediction 475 809 - -
Cla08g01436 1442 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Cla08g01436 1442 SMART iq_5 122 144 IPR000048 GO:0005515
Cla08g01436 1442 SMART iq_5 145 166 IPR000048 GO:0005515
Cla08g01436 1442 MobiDBLite consensus disorder prediction 734 766 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 396 423 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 570 585 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 1363 1383 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 1299 1334 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 709 733 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 188 210 - -
Cla08g01436 1442 PANTHER IQ-DOMAIN 5-RELATED 1 810 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 328 374 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 1421 1442 - -
Cla08g01436 1442 ProSiteProfiles Zinc finger C3H1-type profile. 1389 1417 IPR000571 GO:0046872
Cla08g01436 1442 MobiDBLite consensus disorder prediction 642 666 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 190 205 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 1299 1313 - -
Cla08g01436 1442 MobiDBLite consensus disorder prediction 679 708 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01436 - - - csv:101211948 1187.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01959 Cla-Chr1:34223228 Cla08g01436 Cla-Chr8:27221111 1.28E-62 dispersed
Cla08g01436 Cla-Chr8:27221111 Cla05g01841 Cla-Chr5:30295536 1.54E-14 dispersed
Cla09g00575 Cla-Chr9:5347944 Cla08g01436 Cla-Chr8:27221111 2.79E-06 transposed
Cla01g01966 Cla-Chr1:34313882 Cla08g01436 Cla-Chr8:27221111 1.20E-63 wgd
Cla05g01894 Cla-Chr5:30785382 Cla08g01436 Cla-Chr8:27221111 4.59E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007937 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61597 PF00612 IQ 0.008 CL0220 Cla TF