Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01440 ATGGATGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGATGGTGGGTTTGACTCTGATGATGATGAGCCCATTGGCTCTCTGCTGAAATTGAAGAGATCACGAAACTCTAAAAAGACTAAGTTGGGCGTAGATGATGGCGGTGAAAAGGACAACATAGTTGACAAGAAAGGAGCAAAATTGCCAGTGCAAGAGGACTTTGGGGGAATGGATGATACTTTAGCTAGTTTCAGAAAGAAGTTGAGGCGTCCTAAAAAGGTTAGTGGACCCGAAATTGCTAGGGAACAGAGTTCTGCTCTAAGTGTGACAGAATCTTTAGATCCATTATCTAATATGTCCAGAGGACAAGGGGATTTAGACACAAGATTGAGACCAGAAAATTGTGAATTAATGGATCGTGAAGAGTCTGATCCATCTGCAAAGATTGACATAGAAACAAGGTGTGAAGCACCTGATTTGGAATTAAAAGACATGGAGATGGGTATCCTGAGTAGGAGAAGTGCTAATTGCTCTTTCGATAAACAGTTGGATGATTCATTGTCTGCATTTGTCCAAAAGGTTCAGTCTGGTTCAACTAGGAAATCCTTGGTATCTACAACATTTAAACCAGACTGCAAGGATGAGGCTTCCGAAAATAAATTGAGTCCTTTTTCTAGAGCTGTTTCTGGGGATCATGAAACACACTCCATTGTGAGTTTTAATTCTTCGGCTAAGCTGGCACAAGTTGTCAAAAAAACAGATTCTGAACTTAATACATCCTATTTAATTTCCTGTTCACATTACACCAAAGAGAATTGTAATCCTGGTCGAGGACAATGCCATCTAGGGGTTGAATGTGACCAAGAAGAGTATCAATGCCCTCTTAATAATCACAAGAATCCTGACATGAGACCATGCATATCAAATGAAGTTGATGATGAAGACAGCAAAAACTTTACTCAATTGAGGGACAATTTCCGGGCACTGGAAAGAAAGGCATCCTGTGAAATCAAGAATGTACTAAAACATTGTTCTTGTGGCAATACAATGGTGGATAGCCATTTGGCAGTAATGGGTTCTTTTCAGGATGGGCTAGGTGAAAATCAACTTAATGAAAGTATGTGCAGTTCTTGTCATCCTCTAGAACAGGTAAATGAAAACCATGGCCTTTGTGGGGGTGTTTCCAGCAGAGATTTTTGTGATGTGGTGGCCCAAGAGACCACAGTCACTTTGTCTAAAATAACCCCAGGTGTAGATTGCGAAGGAAAAGAAAGATCACTTGTCATACATCACGATGAATTGCTGAACTCTACCAATTTCTGTGAAAGTTCTTCCAAAGAAATCCGTAGATCTACTAAAGATTTGAAGGTTTCTGATCAATCATTAGGCAGAACAACACTCTCCAATCTTCAGTTATCTGCAGGTTTCGATTCATCGAAAGTGGATAAAACTTGCAGCGACTCTGATAATTTAAATACTGGAACTGATGAGCCGAATAATGAAGGTGGTTCTGTGCAAAAGGAAAATGCTCTAATCTCTAGGATTTCAGATTCAACTGCTGTTCAATCTCACAGATCCGAAAAATCTGGGGCAACTGCTTCTGGACCAAATTATCCAGAGGTTTGTCCTAGTGGAAATTTCAGCATGATATCAGATAGTCAACCGGCCAAGGCTTCAGTGGAGATAGATGGTCCAAATAATATACTTACTGGTAAAGAGGTTAAGGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACGTGTAGCACGCAAGACAAAGAAGCCTAGACATGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGATTAGTGAGCGTGCAGTTGATGGCGACCATTCTTTCAGATCAAGAAAGGATTCTACATCATCGACTTTTACAGAGGCTGAAACTGGTGGTAGAGCTGCAGTGTCTGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACACGCATTTTGCATCTCGTTGACTGTGGGGTCACTGATACTCCCTCTATGGATGAACCACCACGTTTTCCCCTTATTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCTTCTGAGAAAGCCGAATCAGAATCTGACATTAAATATGATCATGAACTGGGAGAGAAGAAGGTTGGAGATGTTAGTGTTGCTTCAGCTGCTGGTTCTGAAGAAGGGGTTTCTGTCATGGTAAAAAATTCTGATGCTTCTAATGCAGAGAACGATGTTTCAGCTGGCTGTGAAGTAATATTGGAAGATGCTGAAGGAAGAGACCCCGTGATTGTAAATAATTTGGATTTACCAAAATCAGTGGAACATGAACAAGAATTGGTACATGACGTGGAGTATGGTACTCCTGATTCTATACCGGTAAAATTGGTTGGTGATGTTCCAGGTAAAGCTGCCTCACATTTAACTAATCATTCAAGAAATGGTTGGCACCCAATCCACTCCTCTGATGAGTGTGTAGGAGGTGATCAACAACAGCAGAGTAATTCTGATGTCAGAAAGAAAGTAATTGTTATTGGAGCTGGTCCTGCTGGCTTAACTGCCGCAAAGCACTTGCATCGTCAGGGCTTTGCTGTCACCATACTTGAAGCCAGGAACAGGTTAGGAGGTCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCCAGCGAAAGAAGACCCGATCCTTCCTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTATTAAATAGTGACTGTCCCCTCTATGACATCATTACATGCAAAAAAGTTCCAGTAGACATGGACGAGGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGGCCATGTCTCTCGAGGAGGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGAGGTATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAATTGGAATCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCGATGTTCACCTAAATCATGTTGTGGCTGATATTTCTTACAGCACCGATGACACTGGGTTTAATGGGAATCAGTGTGCAAAGGTAAAAGTTACCACAACCAATGGTTGCATGTTTCTAGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGCTTGAAAGCAGAAACTATTAAATTTTCTCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGGTTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCAGTTCTCATAGCACTAGTGGTTGGTCAGGCTGCTGTGGAGAGGCAATTTATGAGCTCTTCCGATAATGTAAGCCATGCATTAATGGTCCTTCGGAAACTTTTTGGAGAAGCTATGGTACCTGATCCAGTTGCATCTGTTGTAACTGATTGGGGAAGAGATCCGTTTAGCTATGGTGCTTACTCATATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCAAGACCTGTTGGAAACTGTTTGTTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTACGCATGATTGATGTACTGAGTGATGGTTATGATTTCACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAAAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTCGATGCTGTTAAGCTCTCTGATGCTCTTTACAAAAATTCTTTGGATGGTGCGATTTTGACCACAGAAGCTTTACTACAAGATTTGTTTTTTAGTGCAAAAACCACAGCAGGGAGATTGCAAGTGGCAAAAGAATTGCTGAATCTCCCTGCTGAGACGTTGAAGTCCTTTGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCGATGGGGAAGGATGGGACTCAACTTCTTCGGCAATGTGTTCGTATTCTTGTGTTGGTTTCAACAGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCTATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAGGCTGCTAATGGGGGTTTAAAACTCTCTAAGTCAGTTTCTGCTGTAGAACTATTGAAGAGGAAATCTAATAAAGATTCTTCTTCTGGGAAACCTCCTTTGCATGCATACAACAGCACACTGGATAGTAGGGTCAATTTGCTGACTTCTGCATCAGCTGCAATTCCCTTGCAGTCTGATGTCAATATGAAAAATGATAATAGCAAACAATTAAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCGAGGTCAAGGGGCTCATTCGGAAAGCAGGATGCAGAGATGGAAGACAACAACATTGCTATGACAGAAGAAGAGCAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCCGCACTTGCAGCTGCGAAGGCATATGCATCTTCTGAAGCCAAGAGTGCGATGCAGCTCCCAAAAATCCCCTCCTTTCACAAATTTGCTAGACGGGAGCATTATGCTCAAATGGATGAGTGTGAGTATAAGAAGAAGTTGTCTGGCAGTGTGCTTGGAAGACAAGATTGTATATCCGAAATAGATTCAAGAAACTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCTGCAGATAACCTTTCACAAAGAAGCCATTCGAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCTGGTGAAAGTGCTCCTGTGGATAGTAGTATATACACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCTATTGAGAGATGGCGCACTCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACAAATTGGCATAAACCCACATGGAATAGTGATCAAGTAGCGAATGAGAGCTCAATATCACAAGTGACGATCAACAAGGAGCCCATAAGAAACAATCATCGTGGGGCTGACAGAATTAAGCAGGCTGTTGTTGATTATGTTGCTTCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATCGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGATTCGTGCCTTTGTAGACAAATTAATAGAGAGGCATATGGCTACGAAGCCAGTAACGAAGTCGTGA 5814 42.14 MDGDNKKSGFRKRTKPKDGGFDSDDDEPIGSLLKLKRSRNSKKTKLGVDDGGEKDNIVDKKGAKLPVQEDFGGMDDTLASFRKKLRRPKKVSGPEIAREQSSALSVTESLDPLSNMSRGQGDLDTRLRPENCELMDREESDPSAKIDIETRCEAPDLELKDMEMGILSRRSANCSFDKQLDDSLSAFVQKVQSGSTRKSLVSTTFKPDCKDEASENKLSPFSRAVSGDHETHSIVSFNSSAKLAQVVKKTDSELNTSYLISCSHYTKENCNPGRGQCHLGVECDQEEYQCPLNNHKNPDMRPCISNEVDDEDSKNFTQLRDNFRALERKASCEIKNVLKHCSCGNTMVDSHLAVMGSFQDGLGENQLNESMCSSCHPLEQVNENHGLCGGVSSRDFCDVVAQETTVTLSKITPGVDCEGKERSLVIHHDELLNSTNFCESSSKEIRRSTKDLKVSDQSLGRTTLSNLQLSAGFDSSKVDKTCSDSDNLNTGTDEPNNEGGSVQKENALISRISDSTAVQSHRSEKSGATASGPNYPEVCPSGNFSMISDSQPAKASVEIDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPGSEKDLKLSALRVARKTKKPRHDDMAYEGDIDWEVLISERAVDGDHSFRSRKDSTSSTFTEAETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILHLVDCGVTDTPSMDEPPRFPLIREIYAFLNLRGYINAGIASEKAESESDIKYDHELGEKKVGDVSVASAAGSEEGVSVMVKNSDASNAENDVSAGCEVILEDAEGRDPVIVNNLDLPKSVEHEQELVHDVEYGTPDSIPVKLVGDVPGKAASHLTNHSRNGWHPIHSSDECVGGDQQQQSNSDVRKKVIVIGAGPAGLTAAKHLHRQGFAVTILEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVASERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPVDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVHLNHVVADISYSTDDTGFNGNQCAKVKVTTTNGCMFLGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQFMSSSDNVSHALMVLRKLFGEAMVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSDGYDFTAEVEAMEAAQRQSECENDEVGDIITRLDAVKLSDALYKNSLDGAILTTEALLQDLFFSAKTTAGRLQVAKELLNLPAETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSAVELLKRKSNKDSSSGKPPLHAYNSTLDSRVNLLTSASAAIPLQSDVNMKNDNSKQLKLEMENSSKSDISSSRSRGSFGKQDAEMEDNNIAMTEEEQAAFAAAEAARAAALAAAKAYASSEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPTWNSDQVANESSISQVTINKEPIRNNHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPVTKS 1937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27265738 27275339 + ClCG08G014460.1 Cla08g01440 279095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01440 1937 SUPERFAMILY FAD-linked reductases, C-terminal domain 1197 1308 - -
Cla08g01440 1937 MobiDBLite consensus disorder prediction 89 125 - -
Cla08g01440 1937 Pfam Flavin containing amine oxidoreductase 908 1359 IPR002937 GO:0016491
Cla08g01440 1937 MobiDBLite consensus disorder prediction 1 74 - -
Cla08g01440 1937 ProSiteProfiles SWIRM domain profile. 658 758 IPR007526 GO:0005515
Cla08g01440 1937 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1455 1540 IPR035441 -
Cla08g01440 1937 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 619 1933 - -
Cla08g01440 1937 MobiDBLite consensus disorder prediction 1 33 - -
Cla08g01440 1937 Gene3D - 658 761 IPR036388 -
Cla08g01440 1937 MobiDBLite consensus disorder prediction 98 121 - -
Cla08g01440 1937 PANTHER FLAVIN MONOAMINE OXIDASE 619 1933 - -
Cla08g01440 1937 SUPERFAMILY Homeodomain-like 660 754 IPR009057 -
Cla08g01440 1937 SUPERFAMILY FAD/NAD(P)-binding domain 897 1361 IPR036188 -
Cla08g01440 1937 MobiDBLite consensus disorder prediction 863 892 - -
Cla08g01440 1937 Gene3D - 987 1314 - -
Cla08g01440 1937 MobiDBLite consensus disorder prediction 42 66 - -
Cla08g01440 1937 MobiDBLite consensus disorder prediction 1609 1630 - -
Cla08g01440 1937 Pfam SWIRM domain 670 748 IPR007526 GO:0005515
Cla08g01440 1937 MobiDBLite consensus disorder prediction 476 537 - -
Cla08g01440 1937 MobiDBLite consensus disorder prediction 1611 1626 - -
Cla08g01440 1937 Gene3D - 900 1357 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01440 - - - bhj:120075972 3507.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01440 Cla-Chr8:27265738 Cla11g01798 Cla-Chr11:31641299 3.78E-87 dispersed
Cla11g00666 Cla-Chr11:7756846 Cla08g01440 Cla-Chr8:27265738 6.64E-06 dispersed
Cla08g01440 Cla-Chr8:27265738 Cla07g01028 Cla-Chr7:26716586 1.81E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61599 PF01593 Amino_oxidase 5.20E-99 CL0063 Cla TR