Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01441 ATGTCGTCAACTTTCAGCGGCGATGAAACGGCACCCTTCTTCGGCTTCCTCGGCGCCGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGGACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCAATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTAATTATTAGTACAGGAATTAACCCGAAGGCCAAATCTTATTACCTCTTCGATGGTTACGCACATCTCTCCTCTGGCCTTGCTTGTGGGCTTGCCGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGTGATGCTGGTGTTAGAGCCAATGCGCAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTTTAATTTTTGCCGAAGCTTTGGCACTCTATGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTATGGGAGCCGCTTACGGGACGGCAAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTTATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCAGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGAATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATTGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCTCTTTATGGACTTATTGTTGGTATTATTCTCTCTTCTCGAGCTGGTCAGTCAAGAGCTGATTAA 897 49.39 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27277191 27282915 + ClCG08G014470.1 Cla08g01441 279096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt1 148 213 - -
Cla08g01441 298 Gene3D - 11 159 IPR035921 -
Cla08g01441 298 Gene3D - 160 295 IPR035921 -
Cla08g01441 298 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 160 254 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt2 222 289 - -
Cla08g01441 298 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 Pfam ATP synthase subunit C 159 209 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 Pfam ATP synthase subunit C 230 288 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 3 160 - -
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 161 298 - -
Cla08g01441 298 SUPERFAMILY F1F0 ATP synthase subunit C 220 289 IPR035921 -
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 160 - -
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 161 298 - -
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01441 Cla-Chr8:27277191 Cla11g01536 Cla-Chr11:29002462 1.45E-88 dispersed
Cla08g01441 Cla-Chr8:27277191 Cla08g01299 Cla-Chr8:25908834 6.96E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01441 K02155 - nai:NECAME_16364 308.531