Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01441 ATGTCGTCAACTTTCAGCGGCGATGAAACGGCACCCTTCTTCGGCTTCCTCGGCGCCGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGGACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCAATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTAATTATTAGTACAGGAATTAACCCGAAGGCCAAATCTTATTACCTCTTCGATGGTTACGCACATCTCTCCTCTGGCCTTGCTTGTGGGCTTGCCGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGTGATGCTGGTGTTAGAGCCAATGCGCAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTTTAATTTTTGCCGAAGCTTTGGCACTCTATGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTATGGGAGCCGCTTACGGGACGGCAAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTTATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCAGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGAATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATTGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCTCTTTATGGACTTATTGTTGGTATTATTCTCTCTTCTCGAGCTGGTCAGTCAAGAGCTGATTAA 897 49.39 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 298
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 27277191 27282915 + ClCG08G014470.1 Cla08g01441 279096

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt1 148 213 - -
Cla08g01441 298 Gene3D - 11 159 IPR035921 -
Cla08g01441 298 Gene3D - 160 295 IPR035921 -
Cla08g01441 298 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 160 254 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cla08g01441 298 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt2 222 289 - -
Cla08g01441 298 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 Pfam ATP synthase subunit C 159 209 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 Pfam ATP synthase subunit C 230 288 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 3 160 - -
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 161 298 - -
Cla08g01441 298 SUPERFAMILY F1F0 ATP synthase subunit C 220 289 IPR035921 -
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 160 - -
Cla08g01441 298 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 161 298 - -
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cla08g01441 298 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01441 K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit - nai:NECAME_16364 308.531
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01441 Cla-Chr8:27277191 Cla11g01536 Cla-Chr11:29002462 1.45E-88 dispersed
Cla08g01441 Cla-Chr8:27277191 Cla08g01299 Cla-Chr8:25908834 6.96E-19 transposed
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1050 . . . . . . . . Cmo05g00293 Cmo12g00375 . . . Car12g00401 . . Cpe07g00380 Bhi04g00233 . . . Hepe10g0130 . . Cla08g01441 Cam08g1922 Cec08g1497 . Clacu08g1612 . Cre08g1398 . . Cone17ag1386 Cone20ag0095 . . . Cme03g01900 Blo17g00753 Blo18g00785 Bda08g01232 Bda01g01524 Bpe02g01721 Bpe05g00130 Bma01g00735 Bma05g00155 . . . Cma12g00425 Cma05g00287 Car05g00237 . Cpe11g00238 . . . . . . . . . . . . . . . Lsi08g01343 Csa02g02112 Chy03g01404 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla02g00497 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT2G21410 64.9 0.0e+00 1109.7
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 3.0e-299 1024.6
Cla02g00497 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT4G39080 65.5 0.0e+00 1110.1
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.3e-298 1021.1
Cla08g01441 . 160 298 Primary Pumps ATPases(2) AT4G34720 99.3 3.8e-61 231.1
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cla11g01536 . 75 238 Primary Pumps ATPases(2) AT1G75630 80.3 3.3e-66 248.4
Cla08g01441 . 2 164 Primary Pumps ATPases(2) AT1G75630 79.7 1.8e-64 242.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla11g01536 . 74 195 Primary Pumps ATPases(2) AT1G19910 99.2 5.6e-53 203.8
Cla08g01441 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cla08g01299 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.2e-70 261.9
Cla05g01759 . 2 201 Primary Pumps ATPases(2) AT2G25610 64.5 1.7e-55 213.0
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01441 . 161 298 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01299 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.6e-71 266.2
Cla05g01759 . 19 201 Primary Pumps ATPases(2) AT4G32530 63.8 1.0e-57 220.3
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07810 78.2 0.0e+00 1655.6
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07670 78.0 0.0e+00 1655.2
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla03g00170 . 22 1078 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1304.3
Cla03g01661 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.0e-57 217.6
Cla02g00408 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.7e-268 920.2
Cla10g01933 . 300 407 Primary Pumps ATPases(2) AT3G01390 80.6 3.9e-37 151.0
Cla01g00801 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 1.3e-180 629.4
Cla09g02164 . 1027 1274 Primary Pumps ATPases(2) AT3G58730 82.3 1.1e-111 399.8
Cla10g01560 . 43 495 Primary Pumps ATPases(2) AT3G42050 77.7 2.0e-201 698.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla02g00408 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 3.0e-270 927.5
Cla05g01452 . 92 273 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cla02g00408 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.8e-266 912.5
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28715 82.6 5.4e-186 647.1
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT4G11150 76.4 1.6e-85 312.8
Cla09g00150 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cla02g00408 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.7e-268 920.2
Cla02g00408 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 3.0e-270 927.5
Cla02g00408 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.8e-266 912.5
Cla01g00801 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 1.3e-180 629.4
Cla09g02164 . 1027 1274 Primary Pumps ATPases(2) AT3G58730 82.3 1.1e-111 399.8
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT4G11150 76.4 1.6e-85 312.8
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT3G08560 68.5 7.7e-75 277.3
Cla05g01452 . 92 273 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cla03g01661 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.0e-57 217.6
Cla10g01933 . 300 407 Primary Pumps ATPases(2) AT3G01390 80.6 3.9e-37 151.0
Cla10g01560 . 43 495 Primary Pumps ATPases(2) AT3G42050 77.7 2.0e-201 698.7
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla02g00497 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT2G21410 64.9 0.0e+00 1109.7
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 3.0e-299 1024.6
Cla02g00497 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT4G39080 65.5 0.0e+00 1110.1
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.3e-298 1021.1
Cla08g01441 . 160 298 Primary Pumps ATPases(2) AT4G34720 99.3 3.8e-61 231.1
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cla11g01536 . 74 195 Primary Pumps ATPases(2) AT1G19910 99.2 5.6e-53 203.8
Cla08g01441 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01441 . 161 298 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla11g01536 . 75 238 Primary Pumps ATPases(2) AT1G75630 80.3 3.3e-66 248.4
Cla08g01441 . 2 164 Primary Pumps ATPases(2) AT1G75630 79.7 1.8e-64 242.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla08g01299 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.6e-71 266.2
Cla05g01759 . 19 201 Primary Pumps ATPases(2) AT4G32530 63.8 1.0e-57 220.3
Cla08g01299 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.2e-70 261.9
Cla05g01759 . 2 201 Primary Pumps ATPases(2) AT2G25610 64.5 1.7e-55 213.0
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28710 84.7 4.7e-193 670.6
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28715 82.6 5.4e-186 647.1
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07810 78.2 0.0e+00 1655.6
Cla03g00170 . 22 1078 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1304.3
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07670 78.0 0.0e+00 1655.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102