Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01443 ATGCTTAGTTGTTGTTTTGCCATTTTTGTTCTCTCCTTCCTCTCTTCCTCTCTTTTTCCTCTGTTGTTTTTCTTTTCAGATCATCTTCTGGAAAAAAAGGACGAGAAGGCGGGAAAAGCCGATTGCGCTTTCCATTTTCCCGCTTCAAATCCGACTTTCTGGTTAAGACCATTGAACGATAAGGAATTGGCTAAAAACGACTCGTCGGATTGGGAATGCATCAACAATAATTCTGTCGTGTTCAGAAGTACTTTACCGGAACGCTCTATGTTTCCCCAATCTTACACATTTGATAGAGTATTTGGAGTTGACAGTACAACGAAGCAAGTTTATGAAGAAGGGGCCAAAGAAGTTGTTCTTTCTGTGGTCAATGGGATTAACTCAACAATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACTTTCACCATGAATGGAGTCACTCAATATTCTGTGGCAGACATTTATAATTACATGGAGTCGCATCGAGACAGAGAGTTTGTGCTGAAGTTTTCAGCGATTGAGATATACAATGAAGCTGTTAGAGATCTCCTTAGCTTAGAAAATATCCCACTTAGACTGCTTGATGATCCTGAGAAAGGAACTGTTGTTGAGAAACTTACAGAGGAGACACTGAAAGACAGGAATCATCTCCAGGAGCTTCTTTCCTTCTGTGAAGTTCAAAGAAAGATAGGGGAGACATCTCTTAACGAAACCAGCTCCAGATCCCATCAAATCCTAAGACTGACAATTGAAAGCTCCGCTCGCAAATACAAGAAGTCTGAAAGTTCAAGCACTCTCACCGCTACAGTGAATTTTGTTGATCTTGCGGGAAGTGAACGTGCTTCTCAAACAAATTCTGCTGGTACAAGACTGAAAGAAGGTTGTCACATCAATCGTAGTTTGCTGACTTTGGGAACTGTTATTCGCAAATTAAGCAAAGGAAGGAACGGACATATACCTTATAGAGATTCCAAGTTAACACGCATACTGCAGAATTCTCTAGGTGGAAATGGTCGAACGGCTATCATTTGTACTATGAGTCCTGCACGTAGCCATGTCGAACAATCAAGAAATACATTGCTATTCGCTACTTGTGCAAAAGAGGTGAGTACAAATGCACAAGTGAATGTGGTAGTTTCAGATAAGGCATTGGTGAAGCAGTTGCAAAAAGAATTGGCTAGACTTGAGAGCGAGATGAAGAGCTTAAAACCACTTCCTGTCAAAGGTGATTCTACTTCATTATTGAAAGAGAAAGAACTTCTAATTGAACAGATGGACAAAGAGATAAAGGAATTGACTCGGCAACGTGATCTTGCTCAATATCGAATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCTAAGTGAAAATACAGTACAAACAATACCAGATCTAGTTGACCTAGATCTAGATCTACGTTCTGATGACTCAAGTCTCAAAACTTTTGACACATTTACTGCACATGAAGAGAATAGCCCTCACAAGATTGATCCTCTATTCACTATGAGTCATGAGGACAATTTTCTACTGGATAGCAGTACTCCTGAATTGGCTGGACCTGATCCTTATCAGGACTGGGAAGAGATTGCTCAACGTGTTCATGCAAATTCTGAAGATGGGTGTAAGGATGTTCAATGCATTGAACTGGAAGAATCAAAAGAATCAAAAGAATCACTAAATGAAAATGGTGATTTAACTTTAGCTAGACTGGAAGACAATGAAGGACAGATGATTAGTAGTTTTGGCACTAATCAAGCGACATCCCCACAAAGGAAGAATAAGGAGATAATTACAAACAAAGATTATACTTGTGATGGTTTTATGCCAAAAACAGCTGAGATGCAGAAAACATTGAATTGTATTTTAAATCTTTATCCTTCTGAGCAATCTTTCAGCTCAATTGAAGCAGCGAAATCTCGTTTTCAGAACTTAAAGTTGGCCAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATCCCACCTTCTACTTTGATTGAAAAGGCAGAAGAGGATAAGAAACCTCGAATCGTTGGATCTGAAGTGAACTTCTCTGGACAAGCAGAAGGTAGTCGGAGAAAGCGCGGTTTAAGCTGTGGGAATTTGGAGGAAAATTTGGACACCAAAGACTCACATTCTGTATGTAGTCACTGTTCGGAAGCCAAACCTTTACAAATAATAGATGAAGATGATGATGATAATACTAGTGTTCTCAACTTTTCTACTGGAAAGAAAGGAAAGGGCAAAAATCGGATAAAGAAGCGATCTGGTTCGAGGCTGGGGAGGGTCTCTAAAAAGGAAGAACCTAAAGAAACCACACAAGAAGTTAACATGGAAGAGGCACAAGAACTTCAGGCTCATTCTGAGTGGGTTCTAGAGTTCCAAGGTCAACAAAGAGATATAATTGAGCTTTGGGATGCTTGCAATGTACCATTGGTCCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGACCCTTCTGATGCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGGGAAGCCATTTCTCGATCAATCAATGCATCGGGAAGGAGCGACACCATCACGCAAGCTTCGAGCTTGAAGGCTCTAAATCGCGAGAGAGAAATGTTGGCGAGGCGAATGAAAAAGAAGTTCTCAGTGAAAGAAAGAGACGCCCTTTACCAGAAGTGGGGTATCGACTTGAAGACGAAGCAACGAAGCATACAATTGGCACGAATGCTTTGGTCGAGAACAAAGGATTTCGACCATATACACGAAAGTGCTGCCCTTGTGGCAAAGCTCATTGGATTTGTGGAACCTTCTCAGGTTTCTAGGGAGATGTTTGGGCTATCCTTCTCACTTCAATCTTTAGATCACAGATCTTTTCCCTGGAAAAGGAACATGTCTCTCCCTTTTTGA 2925 40.41 MLSCCFAIFVLSFLSSSLFPLLFFFSDHLLEKKDEKAGKADCAFHFPASNPTFWLRPLNDKELAKNDSSDWECINNNSVVFRSTLPERSMFPQSYTFDRVFGVDSTTKQVYEEGAKEVVLSVVNGINSTIFAYGQTSSGKTFTMNGVTQYSVADIYNYMESHRDREFVLKFSAIEIYNEAVRDLLSLENIPLRLLDDPEKGTVVEKLTEETLKDRNHLQELLSFCEVQRKIGETSLNETSSRSHQILRLTIESSARKYKKSESSSTLTATVNFVDLAGSERASQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAQVNVVVSDKALVKQLQKELARLESEMKSLKPLPVKGDSTSLLKEKELLIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKLSENTVQTIPDLVDLDLDLRSDDSSLKTFDTFTAHEENSPHKIDPLFTMSHEDNFLLDSSTPELAGPDPYQDWEEIAQRVHANSEDGCKDVQCIELEESKESKESLNENGDLTLARLEDNEGQMISSFGTNQATSPQRKNKEIITNKDYTCDGFMPKTAEMQKTLNCILNLYPSEQSFSSIEAAKSRFQNLKLARSKSCLTVLMTIPPSTLIEKAEEDKKPRIVGSEVNFSGQAEGSRRKRGLSCGNLEENLDTKDSHSVCSHCSEAKPLQIIDEDDDDNTSVLNFSTGKKGKGKNRIKKRSGSRLGRVSKKEEPKETTQEVNMEEAQELQAHSEWVLEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDAVYMEVELRRLFFIREAISRSINASGRSDTITQASSLKALNREREMLARRMKKKFSVKERDALYQKWGIDLKTKQRSIQLARMLWSRTKDFDHIHESAALVAKLIGFVEPSQVSREMFGLSFSLQSLDHRSFPWKRNMSLPF 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27296725 27303672 - ClCG08G014510.2 Cla08g01443 279098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01443 974 PRINTS Kinesin heavy chain signature 125 146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01443 974 PRINTS Kinesin heavy chain signature 234 251 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01443 974 PRINTS Kinesin heavy chain signature 270 288 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01443 974 PRINTS Kinesin heavy chain signature 320 341 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01443 974 Gene3D Kinesin motor domain 53 401 IPR036961 -
Cla08g01443 974 Pfam Domain of unknown function (DUF3490) 797 956 IPR021881 -
Cla08g01443 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 404 IPR027417 -
Cla08g01443 974 MobiDBLite consensus disorder prediction 765 779 - -
Cla08g01443 974 PANTHER CENTROMERE PROTEIN E 55 971 - -
Cla08g01443 974 CDD KISc_CENP_E 55 370 - -
Cla08g01443 974 SMART kinesin_4 55 378 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01443 974 ProSitePatterns Kinesin motor domain signature. 269 280 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cla08g01443 974 Pfam Kinesin motor domain 55 370 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01443 974 Coils Coil 416 450 - -
Cla08g01443 974 ProSiteProfiles Kinesin motor domain profile. 48 370 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla08g01443 974 MobiDBLite consensus disorder prediction 743 779 - -
Cla08g01443 974 PANTHER KINESIN-LIKE PROTEIN KIN-7J 55 971 - -
Cla08g01443 974 MobiDBLite consensus disorder prediction 750 764 - -
Cla08g01443 974 Coils Coil 379 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01443 K11498 CENPE; centromeric protein E - csv:101212680 1568.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00791 Cla-Chr7:22103195 Cla08g01443 Cla-Chr8:27296725 6.86E-13 dispersed
Cla08g01443 Cla-Chr8:27296725 Cla11g00015 Cla-Chr11:191930 7.00E-38 dispersed
Cla08g01638 Cla-Chr8:28980545 Cla08g01443 Cla-Chr8:27296725 2.01E-32 transposed
Cla11g00376 Cla-Chr11:4239434 Cla08g01443 Cla-Chr8:27296725 3.04E-65 wgd
Cla02g00484 Cla-Chr2:4739362 Cla08g01443 Cla-Chr8:27296725 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32