Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01445 ATGACGGGAACCCATTTTTCCGCTCGCCCTCGTTTCCACCTACAAATGTCTTTTGCTTTTACTATAAAAAAGCTCTTCCCTGATTGCTCCGGCGAAGCTTCTTCTTCTTCTTCTTCTTCTTCTTGCGTTGCTGATAATCAGAAAGATATGAAGATTCAGTGTGATGTTTGTGAAAAAGGGGATGCGGCGGTGTTCTGCACGGCGGATGAGGCGGCCCTCTGTAGTCTCTGTGATCACCGTGTCCACCATGCCAATAAGCTTGCTTCGAAGCACCGACGGTTTTCTCTGCTCCGTCCTGACGCAGAGGAGGCTCCCGTCTGTGATGTGTGCAGGGAGCGGCGAGGGTTCTTGTTCTGTCAGCAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAGCACGATAGATTTCTTCTGACTGGGATTAAGCTTTCCGCCACCGCTGCTCTGTACGCGCCACCTCCATCCGGCGAGAAACCGGTCGGGACTGGTGCTCGTGTTGTTTCTGAATCTAAGTCAAAGGGCTCTGTCAAGAAAGCGGCTGCCGTTTCTAATGCCTCAACGATATGGCCACCAAGTGTTTGTGTTAATGCCCCAACGAACATAACTCCAGCGGCGGCAGTGAACAAGGGCGGTGGAGGCCAGATTGCGACCGGCGGCGGTGGATCGGCGAGTAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCGTCTGTGTCTCCCCCTTTTGTGGAGTTTGATGAAGGGGTGGGATTTCCATTTGTGGAAGGTGATTTTAATGGTTGTTTCTCATCATCGGAACGTTTGGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCTGTATAATTCAGGATTAATGATGAATAATGGGTTGAAGGACACAAAGGAATTGGGATTAAATTCATCAAAAGTCAATAGAGTGTGGACAGATGATGGTTTCACTGTGCCACAGATTACAAGTACAGCCCCATCTGCAGGCTTTAAGAGATCCAGACCTTTTTGGGACGTCCCTGATCCTTCTAATTCACAATTACAACTGATTTGTTGTCCAACGAATCCCGCTTCATATTCACTTGCTCGATCTGTTCATGCCCATATGATTGCTTGGGGATTCAAGCCTCATGGACACCTTGTCGATCGCCTACACGATTTGTGCTGGAAATCGTTCGATCTTGTGTATGCCCGCCAACTGTTCGACGAAATTACTGACCCAGGGGCTGTAGTGAGGACGACGTTGATTGCGGCATACTCTGCATTGGGAATTCGAATATGGCAGGAGAAATATTCAATGCCTCGTCCATTGAATATGAGGAACACTATTATCTCCAACGCAGTGATTACTGGATATGTTGCAGCGTGGCCAAATGCATGTGTCCGTTTGAAAAGGAAGGGATGA 1455 48.66 MTGTHFSARPRFHLQMSFAFTIKKLFPDCSGEASSSSSSSSCVADNQKDMKIQCDVCEKGDAAVFCTADEAALCSLCDHRVHHANKLASKHRRFSLLRPDAEEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSATAALYAPPPSGEKPVGTGARVVSESKSKGSVKKAAAVSNASTIWPPSVCVNAPTNITPAAAVNKGGGGQIATGGGGSASSISEYLMETLPGWHFEDFLDSSVSPPFVEFDEGVGFPFVEGDFNGCFSSSERLELWVPQGPPPALYNSGLMMNNGLKDTKELGLNSSKVNRVWTDDGFTVPQITSTAPSAGFKRSRPFWDVPDPSNSQLQLICCPTNPASYSLARSVHAHMIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPGAVVRTTLIAAYSALGIRIWQEKYSMPRPLNMRNTIISNAVITGYVAAWPNACVRLKRKG 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27322483 27332135 + ClCG08G014540.2 Cla08g01445 279100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01445 484 SMART bboxneu5 49 96 IPR000315 GO:0008270
Cla08g01445 484 SMART bboxneu5 102 149 IPR000315 GO:0008270
Cla08g01445 484 Pfam B-box zinc finger 103 145 IPR000315 GO:0008270
Cla08g01445 484 Gene3D Classic Zinc Finger 49 143 - -
Cla08g01445 484 ProSiteProfiles Zinc finger B-box type profile. 49 96 IPR000315 GO:0008270
Cla08g01445 484 PANTHER B-BOX ZINC FINGER PROTEIN 19 50 352 - -
Cla08g01445 484 CDD Bbox1_BBX-like 106 149 - -
Cla08g01445 484 PANTHER B-BOX ZINC FINGER PROTEIN 22 50 352 - -
Cla08g01445 484 CDD Bbox1_BBX-like 54 96 - -
Cla08g01445 484 ProSiteProfiles Zinc finger B-box type profile. 102 149 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g01445 Cla11g00377 CCT
Cla08g01445 Cla11g00377 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01445 Cla-Chr8:27322483 Cla08g01425 Cla-Chr8:27116930 6.82E-36 dispersed
Cla08g01444 Cla-Chr8:27305905 Cla08g01445 Cla-Chr8:27322483 2.68E-29 tandem
Cla06g00088 Cla-Chr6:893819 Cla08g01445 Cla-Chr8:27322483 2.27E-35 transposed
Cla07g00964 Cla-Chr7:25824123 Cla08g01445 Cla-Chr8:27322483 5.41E-35 transposed
Cla09g01311 Cla-Chr9:20498015 Cla08g01445 Cla-Chr8:27322483 5.54E-53 transposed
Cla01g01962 Cla-Chr1:34257220 Cla08g01445 Cla-Chr8:27322483 5.61E-23 wgd
Cla11g00377 Cla-Chr11:4256371 Cla08g01445 Cla-Chr8:27322483 2.09E-47 wgd
Cla02g00492 Cla-Chr2:4855440 Cla08g01445 Cla-Chr8:27322483 1.14E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61600 PF00643 zf-B_box 2.60E-05 No_clan Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01445 - - csv:101209573 537.724