Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01447 | ATGGAATTTTGCTCAAAATTGGTGTTAGTCTCAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAATCATCAACAACAACAACCAAATCCTTCTCTTACAAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCGAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTGCCGCCGCTGTTACCGCTGCCACCGCCTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCCGTGAACATTGGTGGTCACGTGTTCAAAGGAATTCTCTACGACCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGTACCAACCCCTCCGCTGCCGCCGCCGCCGCTCCGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGAGAGATGAGAAGATGTTCTTATGAGGAAGACATGATGAGGAGAAATTGA | 1080 | 51.57 | MEFCSKLVLVSGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNHQQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTAAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAAAAAAPLLDPSIYPAPLNAFMAGTQFFPPSREMRRCSYEEDMMRRN | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 27346475 | 27348157 | + | ClCG08G014580.1 | Cla08g01447 | 279102 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01447 | 359 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 19 | 342 | - | - | |
| Cla08g01447 | 359 | MobiDBLite | consensus disorder prediction | 281 | 307 | - | - | |
| Cla08g01447 | 359 | MobiDBLite | consensus disorder prediction | 275 | 307 | - | - | |
| Cla08g01447 | 359 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 19 | 342 | IPR007818 | GO:0003700|GO:0006355 | |
| Cla08g01447 | 359 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 221 | 269 | IPR006511 | - | |
| Cla08g01447 | 359 | Pfam | Domain of unknown function (DUF702) | 115 | 270 | - | - | |
| Cla08g01447 | 359 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 117 | 159 | IPR006510 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla05g01902 | Cla08g01447 | CCT | |
| Cla05g01902 | Cla08g01447 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g02219 | Cla-Chr2:37303755 | Cla08g01447 | Cla-Chr8:27346475 | 8.71E-42 | dispersed | |
| Cla05g02685 | Cla-Chr5:38037487 | Cla08g01447 | Cla-Chr8:27346475 | 4.07E-38 | dispersed | |
| Cla08g01447 | Cla-Chr8:27346475 | Cla09g01313 | Cla-Chr9:20577197 | 9.41E-93 | dispersed | |
| Cla01g01952 | Cla-Chr1:34179641 | Cla08g01447 | Cla-Chr8:27346475 | 1.71E-66 | wgd | |
| Cla05g01902 | Cla-Chr5:30859567 | Cla08g01447 | Cla-Chr8:27346475 | 1.03E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61601 | PF05142 | DUF702 | 5.80E-68 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01447 | - | - | csv:101213154 | 527.709 |