Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01448 ATGGATCTGCTGCGCTCGGAGCCAATGCAATTGGTGCAGCTGATCATTCCTAATGAATCGGCGCACAGGACGATTTCTTACCTCGGCGACCTCGGTCTCTTCCAATTCAACAATGTGAGTCACATTGCATTGGAAATCATCTTCTGGTTTTCGATCTTCTTGTCTATCATGTTAGATCACCTTGGTTATCATGTTAGGTTCCGTTTCCTTGTTCGTAATTGTATTGTGATTCTGAGTTTACTACTTGACTTCAATTTCGTAAAGGCTAATGTAGGTTCAGTTTCTTTGTTTGTAATCGCCAATGCCATTGTAATTCTGAGTTTACTACTTGAATTTAATTTCATAAAGGCTAATCTCAATGCATCTAGAAGCCCATTCCAGCGGACGTATGCTGCCCAGATTAAAAGATGTGGGGAAATGGCTCGGAAGCTACGTTTTTTCAGGGAGCAAATGACAAAGGCTGGTATACTGCCGTCATCAAATTCTCTAGGGACTCCTGATTTTGATCTGGATAATTTGGAGGTTAAACTTGGAGAATTTGAGGTAGAGTTGTTAGAGATAAATGACAACAACGAAAAGTTACAACGCAATTATAGTGAGCTATTGGAATACAAGCTTGTACTCCAGAAGGTTGGTGAGTTTTTCCATCTTGCTCAAAGCATAGCTGCAGCTCAGCAAAGAGAACTGGAAGTGCAGCAAAACGGTGAAGGATCCATCGACACTCCCTTATTATTGGAACAAGAAATGACAACCGATTCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGAGAAAAGGCAATGACTTTTGAGAGGATTTTGTTTCGTTCAACTAGGGGCAATCTGTATCTGAGACAAGCTGTGGTTGATGGTTCCGTCACTGATCCTGTAACTGCGGAGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGGATAAAATTCTGAAAATATGCGACGCTTTTGATGCAAACCGTTACCCATTCACTGATGACTTGAGCAAACAAATTCAGATGATTACAGAGGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATTGATATGGGGCAACTGCACCGAAGTAAACTCTTGCAGACGATTAGCCATCAGTATGAGCTGTGGAATCTTCTGGTAAAGAAGGAAAAATCTGTTTACCACACTTTGAATATGCTCAGTGTTGATGTTACAAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAAGTGTGATGCAGATGGCAACCCTTGACAGCAACTCACAAATCGAGGCTATCTTTCATGTTTTGCAAACAAAGGAAGCACCACCAACATATTTCCGCACAAACAAATTTACTTCTTCGTTTCAAGAAATCGTGGATGCATATGGGGTTGCTAAGTATCAGGAAGCAAATCCTGGAGTCTACACTATTGTCACCTTCCCTTTCCTGTTTGCTGTAATGTTTGGCGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATTTTATAATAAGGGAGAAGAAGTTTTCCAGCCAGAAACTTGGAGATATCATTGAAATGACTTTTGGAGGTCGTTATGTTATCATGATGATGGCACTTTTTTCGATCTACACAGGACTTATCTATAATGAATTCTTTTCTGTCCCATTTGAACTGTTTGGGCCTTCTGCATACGGTTGTCGTGATACTTCATGCAGGGATGCTACTACCATTGGTTTAATAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCTAAGTGGCATGGCACGCGAAGTGAGTTACCTTTTCTCAACTCTTTGAAGATGAAGATGTCTATCCTAGTGGGAGTAGCTCAAATGAATCTAGGAATTATACTGAGCTACTTCAATGCGAAATTCTTTGGAGAAAACATTAACATCTGGTACCAATTTGTTCCACAGATGATATTCTTGAACAGCTTATTTGGTTACCTCTCACTTCTCATAATTGTAAAATGGTACTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCTACTGATGATCTAGGTGAAAATCAGCTTTTCGAAGGACAGAAGTTTCTTCAGAGGCACCAAGGTCAATCCTACTCCGTACTTCACAACACAGATGAGAATCATGAAATGGAACAACACCACGGTTCCCGCGGCCATGAGTTTGATTTCAGTGAGGTTTTTGTACACCAACTTATACATACCATAGAGTTTGTTCTTGGTGCAGTCTCTAACACAGCATCCTATCTTCGTCTATGGGCCCTCAGTCTAGCGCATTCGGAGTTGTCGAGTGTATTCTACGACAAGGTTTTACTCCTAGCTTGGGGGTTCAATAGTTTGATCATCCGAATATTAGGAATAGCCGTTTTCATTTGTGCAACTGTCGGAGTTTTACTAATTATGGAAACTCTAAGCGCATTCCTACACGCCTTGAGGCTCCATTGGGTGGAGTTTCAGAACAAATTCTACGCAGGAGATGGATTCAAATTTTCTCCCTTCTCATTTTCGTTGCTTCGGGATGAGGATGAGTAG 2580 40.78 MDLLRSEPMQLVQLIIPNESAHRTISYLGDLGLFQFNNVSHIALEIIFWFSIFLSIMLDHLGYHVRFRFLVRNCIVILSLLLDFNFVKANVGSVSLFVIANAIVILSLLLEFNFIKANLNASRSPFQRTYAAQIKRCGEMARKLRFFREQMTKAGILPSSNSLGTPDFDLDNLEVKLGEFEVELLEINDNNEKLQRNYSELLEYKLVLQKVGEFFHLAQSIAAAQQRELEVQQNGEGSIDTPLLLEQEMTTDSTKQVKLGYISGLVPREKAMTFERILFRSTRGNLYLRQAVVDGSVTDPVTAEKVEKNVFVIFYSGERAKDKILKICDAFDANRYPFTDDLSKQIQMITEVSGKLSELKTTIDMGQLHRSKLLQTISHQYELWNLLVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQSVMQMATLDSNSQIEAIFHVLQTKEAPPTYFRTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSSQKLGDIIEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDTSCRDATTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILVGVAQMNLGIILSYFNAKFFGENINIWYQFVPQMIFLNSLFGYLSLLIIVKWYSGSQADLYHVMIYMFLSPTDDLGENQLFEGQKFLQRHQGQSYSVLHNTDENHEMEQHHGSRGHEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNSLIIRILGIAVFICATVGVLLIMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPFSFSLLRDEDE 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27365651 27376157 + ClCG08G014590.2 Cla08g01448 279103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01448 859 PIRSF ATP6V0A1 1 45 IPR026028 GO:0000220|GO:0046961
Cla08g01448 859 PIRSF ATP6V0A1 707 859 IPR026028 GO:0000220|GO:0046961
Cla08g01448 859 PIRSF ATP6V0A1 90 711 IPR026028 GO:0000220|GO:0046961
Cla08g01448 859 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1 39 - -
Cla08g01448 859 Coils Coil 170 204 - -
Cla08g01448 859 PANTHER VACUOLAR PROTON ATPASES 111 708 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cla08g01448 859 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 708 859 - -
Cla08g01448 859 Pfam V-type ATPase 116kDa subunit family 717 851 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cla08g01448 859 Pfam V-type ATPase 116kDa subunit family 118 709 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cla08g01448 859 PANTHER VACUOLAR PROTON ATPASES 1 39 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cla08g01448 859 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 111 708 - -
Cla08g01448 859 PANTHER VACUOLAR PROTON ATPASES 708 859 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02031 Cla-Chr2:35337462 Cla08g01448 Cla-Chr8:27365651 3.45E-09 dispersed
Cla02g00497 Cla-Chr2:4907715 Cla08g01448 Cla-Chr8:27365651 1.08E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01448 K02154 - csv:101209817 1366.29