Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01449 ATGAAACGAAGAAAAGCCAGTTTTTGGATGGATTATTTGTTTGCAGGTTTTGTTGTGGTAGTTGGCATGTGGAGGCCGATGGCGGATGGTGCAGATCAGATCGGCAAAACGACGTCGGTTGTGAAAGTGGGTGTGGTTCTTGATTTAAGTACTTGGGTTGGGAAAATGGGTTTGAGTTGTATCAATATTTCCCTCTCCGACTTCTATTCTTCTCATCCTCAACACAACACAACAATCCTCCTCCATGTCACTGACTCTAAGGATGATCTTGTGCTGGCTGCTACTCAAGGTTCGGAGCTCATACAGAAGAGTAAAGTGGAGGCCATCCTAGGGCAAGAAAGTTCGTTCCAGGCTCCCTACATTATCCAACTAAGTGAAAAATTTGAGGTTCCATTAATCTCCTTTGCACCACCACCAACCTCCACTTTCTCTAACCTAAAATCTCCATACTTATTCCGAGCACCCTACAACCGTTTCTCCCAAATTTATGCAATTTGCGACATCATTAAAGCTTTTCAATGGGAGCAAGTTGTTATCATTTACCAAGACGATGAATTTGGAAAGTGGATTGTCGCAGATCTGATCCAGGCTTTACAGGTAGAGGTACAAACCGAAGAAGGAGTCAAGGAAGTATACACCTATGTTCATCGAATCGACCCGGCAGCTTCTGGCGACCAAATTAGAGAAGAGCTTGAAAGATTGAGCATGAAGCAGCGAGCAACCGTTTTCGTTGTCCACATGGTTCACAGTCTGGCATCTAAAGTATTCAGGATGGCCAATGAAATTGGGATAATGAGCGAAGGCTATGCTTGGATTCTCACCGAGTCCACAACAACATCCTTAAATTCTATGAATAACAACTTTTCAACTCTCAGCTGGATGCAGGGAGTTTTGGGAGTAAAAACCTACATTCCGAGAACAATGGAGGTAGACAACTTCACCATTCGATGGAGAAGGAAATTTCTACTAGACAATCCAGAAATGATCATCAAATATTATCCAAAACCAGATGTTTTTGGACTGTGGGCTTACGATGCTACTAGAGCGCTAGCCATGGCGGTCGAGAGAAGCTTCAATATTTCTTCAGGGGCATCTCAAAATGGAAAGAAAATCATGGAGTCGCTGTCAATGATAAAATTCAAAGGTCTGAGCGGGAGGGGGTTTAGTTTGGGTAAATTAGACCAACTAGAATCACAAAATTTGCAAATAGTAAATGTAATTGGAGATGGGGAAATTAGTACAGTGGGATATTGGAAGCCTGAAATGGGTTTGACTGGAGAATTTAATAAAAAAGTTAAATTAAGACCCATTATTTGGCCAGGATACTCCTTTCAACCCCCTAAGGGAAGGATTCCATTTAATCCCAGGAAGATACTGAGGATAGGAGTTCCATTTAATCTGAGTTTTACGCCTTTCTTCATACGTAACGACCACGGCATTAATGGATATTGTATAGATATCTTCCAGGCAGCTGTTGCAGAGCTTGATCCTTATTATTCTTTTCCATATGAATTTATTCCCTTCCACGGTTCATCCTACGATGACTTGATAGTGGCTGTGTACAGAGGGGAATTTGATGCTGCGGTTGGAGACATAACAATATTAGCGAACAGATCTTCGTTTGTAGATTTTACTCTGCCATTTACTGATCCTGGAATTGCTGTGATAGTTCCTAGACATGAGTCGGTGAAACATGAATGGCTATTCTTGAAGCCCTTGACTTTTAACCTTTGGATTACAAGCTTCTGCTTCTTCGTTTTCATGGGCTTCGTTGTTTGGATTCTCGAACATCAAAACAATGAAGACTTCCGTTGCGGTCCTTTGTCTCACCAAATCGCCACCAGTCTCTGGTTCTCATTCAGTATCATGGTCTTCGCCCAAAGGGAGACATTAGTGAGCAATCTATCAAGGTTAGTGGTGGTGATATGGTTCTTCGTAGTGTTCGTCCTAACACAGAGCTACACAGCTAGCTTAACGTCGTGGTTAACGGTTCAACAACTCCAACCAGTCACCGATATTGATCAGATAATAAAAAACAATTGGCATGTTGGATATCAAAAGGGCTCCTATGTTTACGACACATTAAAGTTTTTAGGCATTAAAGAAATGGTACCCTATGGCTCATTAGAGGAACTGCAGGAGCTCTTTACTAAAGGAAGCCGCAGTGGTGGTATTGATGCTGCCATTGATGAGATCCCTTACATGAAGCTCCTTCTTACAACACAATTTGGTGAATATACCATGGGGCCTTCTCAATACAATTCCGGTGGTTTTGGATTTGCATTTGCACGAGGTTCATCTTTGGTCGACGGTATGTCGAAGGCCGTGTTGAAAGTGATGCAAAGTGATAAAATAAGCCAAATAGATAAGAAGTGGTTTGGGAATAAAATCAGCCACCAATCTGTCAGTAGTGATGGTTTAGAGGCGTCTTCTTCAAGCCTTGACCTGAGTTACTTTAAGAGCTTATTCTTCATCTCCGCTTTTACAGCTATCTTCGCTCTCACCTTTTATTTCATCCATTGTTTCATTTCTAAACGAAGATTCAAAGTCCATTTCAATTACTCTGACTCCACTACCATATGGAGAATAATAACTGCCACCACTTTCCGTATTCTCTTAATGAAAGACGACAACCGTCAGGAGGATCAGAATAATGTCGGACCATCGGCGGCGGTTGCAGTAATGGACGAGGCCTCTTCGAGCACCAACACCCAATTCCCATCTCCTTCATCCCACGACTCCTCTCAGATGGAGCGCCCCGCTGTAATCGCTCTCGTCTTTACCATTCTACTATCGGCGACGGTAGCTTACGGTGAATCTTTCAGTCAAATCAACGGCGCCAAAATTGACGGCGAAGATCTTCTGATTCGTCAAGTCGTCTCCGGTGCCGATGATCGTCTCCTAACCGCCGAGCAACACTTCCAGAACTTCAAACTCAAGTTCGGAAAGACCTACGCCACGGAAGAGGAGCACGATTACAGATTCCGTGTCTTCAAGGCTAACCTCCTCAAAGCCAAGCGCCACCAGAAGCTCGATCCCGACGCTGTCCATGGCGTCACTCGGTTTTCCGATCTTACCGAGTCCGAGTTCCGTACAAATTTCGTCGGATTGAATCGGCTTCGTCTTCCTGCTGATGCTCAGAAGGCTCCGATCCTTCCTACCGACGACCTAGCCCCCGATTTCGATTGGCGCGACCAAGGTGCCGTCACACCGGTCAAAGATCAGGGTTCCTGTGGCTCGTGTTGGTCTTTTAGTGCCGTTGGAGCGCTGGAGGGAGCTAATTTCTTGTCAACTGGAAAGCTTGTTAGTCTGAGTGAGCAACAGCTTGTGGATTGTGATCATGAGTGTGATCCTGAGGAAGCTGGTGCATGCGACGCAGGGTGCGGCGGGGGGCTAATGAACTCAGCTTTTGAGTACATTTTGAAAGCAGGTGGATTAGAGAAAGAGGAGGACTATCCTTACACCGGCACCGATCGTGGCCCTTGCAAATTCCAAAATAGCAAAATTGCTGCTTCCGTAACCAACTTCAGTGTCATTTCTAATGATGCCGAACAAATTGCAGCAAACTTGGTCAAGAATGGCCCTCTAGCAATTGGAATCAATGCAGCTTTCATGCAAACATACATAAAGGGAGTTTCATGCCCATACATTTGCTCTAAACGAAATCTAGATCATGGAGTACTGCTGGTAGGCTATGGATCTGCCGGCTTTGCTCCGATACGGTTGAAGGAGAAGCCTTATTGGATCATCAAAAACTCGTGGGGTGAAAACTGGGGAGAAAATGGCTACTACTTACTTTGCAGGGGCAAGAATATCTGTGGATCCGAGTCGATGGTCTCGTCCGTGGCTGCTACCTCAAACTGA 3864 44.54 MKRRKASFWMDYLFAGFVVVVGMWRPMADGADQIGKTTSVVKVGVVLDLSTWVGKMGLSCINISLSDFYSSHPQHNTTILLHVTDSKDDLVLAATQGSELIQKSKVEAILGQESSFQAPYIIQLSEKFEVPLISFAPPPTSTFSNLKSPYLFRAPYNRFSQIYAICDIIKAFQWEQVVIIYQDDEFGKWIVADLIQALQVEVQTEEGVKEVYTYVHRIDPAASGDQIREELERLSMKQRATVFVVHMVHSLASKVFRMANEIGIMSEGYAWILTESTTTSLNSMNNNFSTLSWMQGVLGVKTYIPRTMEVDNFTIRWRRKFLLDNPEMIIKYYPKPDVFGLWAYDATRALAMAVERSFNISSGASQNGKKIMESLSMIKFKGLSGRGFSLGKLDQLESQNLQIVNVIGDGEISTVGYWKPEMGLTGEFNKKVKLRPIIWPGYSFQPPKGRIPFNPRKILRIGVPFNLSFTPFFIRNDHGINGYCIDIFQAAVAELDPYYSFPYEFIPFHGSSYDDLIVAVYRGEFDAAVGDITILANRSSFVDFTLPFTDPGIAVIVPRHESVKHEWLFLKPLTFNLWITSFCFFVFMGFVVWILEHQNNEDFRCGPLSHQIATSLWFSFSIMVFAQRETLVSNLSRLVVVIWFFVVFVLTQSYTASLTSWLTVQQLQPVTDIDQIIKNNWHVGYQKGSYVYDTLKFLGIKEMVPYGSLEELQELFTKGSRSGGIDAAIDEIPYMKLLLTTQFGEYTMGPSQYNSGGFGFAFARGSSLVDGMSKAVLKVMQSDKISQIDKKWFGNKISHQSVSSDGLEASSSSLDLSYFKSLFFISAFTAIFALTFYFIHCFISKRRFKVHFNYSDSTTIWRIITATTFRILLMKDDNRQEDQNNVGPSAAVAVMDEASSSTNTQFPSPSSHDSSQMERPAVIALVFTILLSATVAYGESFSQINGAKIDGEDLLIRQVVSGADDRLLTAEQHFQNFKLKFGKTYATEEEHDYRFRVFKANLLKAKRHQKLDPDAVHGVTRFSDLTESEFRTNFVGLNRLRLPADAQKAPILPTDDLAPDFDWRDQGAVTPVKDQGSCGSCWSFSAVGALEGANFLSTGKLVSLSEQQLVDCDHECDPEEAGACDAGCGGGLMNSAFEYILKAGGLEKEEDYPYTGTDRGPCKFQNSKIAASVTNFSVISNDAEQIAANLVKNGPLAIGINAAFMQTYIKGVSCPYICSKRNLDHGVLLVGYGSAGFAPIRLKEKPYWIIKNSWGENWGENGYYLLCRGKNICGSESMVSSVAATSN 1287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27376504 27393840 - ClCG08G014600.2 Cla08g01449 279104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01449 1287 Pfam Bacterial extracellular solute-binding proteins, family 3 468 795 IPR001638 -
Cla08g01449 1287 Gene3D - 157 424 - -
Cla08g01449 1287 PANTHER GLUTAMATE RECEPTOR 2.9 41 898 - -
Cla08g01449 1287 CDD GluR_Plant 457 793 - -
Cla08g01449 1287 Pfam Papain family cysteine protease 1059 1281 IPR000668 GO:0006508|GO:0008234
Cla08g01449 1287 Gene3D - 452 566 - -
Cla08g01449 1287 SMART GluR_14 460 795 IPR001320 GO:0015276|GO:0016020
Cla08g01449 1287 CDD Peptidase_C1A 1061 1282 IPR039417 -
Cla08g01449 1287 Gene3D Cysteine proteinases 954 1283 - -
Cla08g01449 1287 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 1075 1086 IPR000169 -
Cla08g01449 1287 Pfam Ligand-gated ion channel 796 828 IPR001320 GO:0015276|GO:0016020
Cla08g01449 1287 Pfam Receptor family ligand binding region 62 408 IPR001828 -
Cla08g01449 1287 PRINTS Papain cysteine protease (C1) family signature 1247 1253 IPR000668 GO:0006508|GO:0008234
Cla08g01449 1287 PRINTS Papain cysteine protease (C1) family signature 1075 1090 IPR000668 GO:0006508|GO:0008234
Cla08g01449 1287 PRINTS Papain cysteine protease (C1) family signature 1225 1235 IPR000668 GO:0006508|GO:0008234
Cla08g01449 1287 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 1247 1266 IPR025661 -
Cla08g01449 1287 SUPERFAMILY Periplasmic binding protein-like II 438 796 - -
Cla08g01449 1287 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 898 - -
Cla08g01449 1287 Gene3D - 693 800 - -
Cla08g01449 1287 Pfam Cathepsin propeptide inhibitor domain (I29) 974 1030 IPR013201 -
Cla08g01449 1287 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 1223 1233 IPR025660 -
Cla08g01449 1287 SUPERFAMILY Cysteine proteinases 970 1281 IPR038765 -
Cla08g01449 1287 SUPERFAMILY Periplasmic binding protein-like I 39 449 IPR028082 -
Cla08g01449 1287 Gene3D - 75 398 - -
Cla08g01449 1287 Gene3D - 567 692 - -
Cla08g01449 1287 SMART Inhibitor_I29_2 974 1030 IPR013201 -
Cla08g01449 1287 SMART pept_c1 1057 1283 IPR000668 GO:0006508|GO:0008234
Cla08g01449 1287 CDD PBP1_GABAb_receptor_plant 42 425 IPR044440 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01449 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101213397 972.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01279 Cla-Chr6:26116789 Cla08g01449 Cla-Chr8:27376504 5.28E-139 transposed
Cla07g01293 Cla-Chr7:30042395 Cla08g01449 Cla-Chr8:27376504 6.24E-178 transposed
Cla08g00971 Cla-Chr8:22336144 Cla08g01449 Cla-Chr8:27376504 0 transposed
Cla08g01386 Cla-Chr8:26716672 Cla08g01449 Cla-Chr8:27376504 2.14E-178 transposed
Cla11g00383 Cla-Chr11:4290094 Cla08g01449 Cla-Chr8:27376504 1.65E-174 wgd
Cla02g00498 Cla-Chr2:4920505 Cla08g01449 Cla-Chr8:27376504 3.15E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202