Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01453 | ATGTTGAAATCTTCATCCAACAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACTTGGGGAAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTAGCCTATGACAATGCTGCCCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCATCTTTCTCCTGTTTCTGCTTCTTCTTCTTCTTCTGATAACGTTGCTGCTAATTCTAATTCTAATTCTAATGCCAATGCCATTGTGGAAGATGTTGCTTCCTCTGTTTCTCATGAAACCAACAATAACAACACTGTATCGCCGAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGAGCTATGAGTATTAGTTTAGATGATTCTATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTATTGTTATGGAACATGAGCAGGATCATCATCATCAAGGCTTTTTTGCTGCTAATTTGATGGAAACAAATGGAAATGGTGGATGTGGATGGGATACACTTCAATGGTGTTTATGA | 636 | 40.72 | MLKSSSNNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPVSASSSSSDNVAANSNSNSNANAIVEDVASSVSHETNNNNTVSPKKRFREEEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPIVMEHEQDHHHQGFFAANLMETNGNGGCGWDTLQWCL | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27429935 | 27430570 | - | ClCG08G014650.1 | Cla08g01453 | 279108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01453 | 211 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 8 | 198 | - | - | |
Cla08g01453 | 211 | SUPERFAMILY | DNA-binding domain | 31 | 89 | IPR016177 | GO:0003677 | |
Cla08g01453 | 211 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cla08g01453 | 211 | Pfam | AP2 domain | 31 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01453 | 211 | ProSiteProfiles | AP2/ERF domain profile. | 31 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01453 | 211 | PRINTS | Ethylene responsive element binding protein signature | 32 | 43 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01453 | 211 | PRINTS | Ethylene responsive element binding protein signature | 54 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01453 | 211 | CDD | AP2 | 30 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01453 | 211 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 8 | 198 | - | - | |
Cla08g01453 | 211 | Gene3D | AP2/ERF domain | 31 | 89 | IPR036955 | GO:0003700|GO:0006355 | |
Cla08g01453 | 211 | SMART | rav1_2 | 31 | 94 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g01904 | Cla08g01453 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g00678 | Cla-Chr4:21530776 | Cla08g01453 | Cla-Chr8:27429935 | 1.46E-31 | dispersed | |
Cla08g01453 | Cla-Chr8:27429935 | Cla11g00574 | Cla-Chr11:6486334 | 4.85E-29 | dispersed | |
Cla10g01632 | Cla-Chr10:31971690 | Cla08g01453 | Cla-Chr8:27429935 | 7.79E-35 | transposed | |
Cla11g00580 | Cla-Chr11:6568432 | Cla08g01453 | Cla-Chr8:27429935 | 8.07E-26 | transposed | |
Cla05g01904 | Cla-Chr5:30890743 | Cla08g01453 | Cla-Chr8:27429935 | 5.14E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61602 | PF00847 | AP2 | 2.60E-14 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01453 | - | - | cpep:111805867 | 263.077 |