Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01453 ATGTTGAAATCTTCATCCAACAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACTTGGGGAAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTAGCCTATGACAATGCTGCCCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCATCTTTCTCCTGTTTCTGCTTCTTCTTCTTCTTCTGATAACGTTGCTGCTAATTCTAATTCTAATTCTAATGCCAATGCCATTGTGGAAGATGTTGCTTCCTCTGTTTCTCATGAAACCAACAATAACAACACTGTATCGCCGAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGAGCTATGAGTATTAGTTTAGATGATTCTATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTATTGTTATGGAACATGAGCAGGATCATCATCATCAAGGCTTTTTTGCTGCTAATTTGATGGAAACAAATGGAAATGGTGGATGTGGATGGGATACACTTCAATGGTGTTTATGA 636 40.72 MLKSSSNNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPVSASSSSSDNVAANSNSNSNANAIVEDVASSVSHETNNNNTVSPKKRFREEEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPIVMEHEQDHHHQGFFAANLMETNGNGGCGWDTLQWCL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27429935 27430570 - ClCG08G014650.1 Cla08g01453 279108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01453 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 8 198 - -
Cla08g01453 211 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Cla08g01453 211 MobiDBLite consensus disorder prediction 1 30 - -
Cla08g01453 211 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Cla08g01453 211 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Cla08g01453 211 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Cla08g01453 211 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Cla08g01453 211 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Cla08g01453 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 198 - -
Cla08g01453 211 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Cla08g01453 211 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01904 Cla08g01453 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00678 Cla-Chr4:21530776 Cla08g01453 Cla-Chr8:27429935 1.46E-31 dispersed
Cla08g01453 Cla-Chr8:27429935 Cla11g00574 Cla-Chr11:6486334 4.85E-29 dispersed
Cla10g01632 Cla-Chr10:31971690 Cla08g01453 Cla-Chr8:27429935 7.79E-35 transposed
Cla11g00580 Cla-Chr11:6568432 Cla08g01453 Cla-Chr8:27429935 8.07E-26 transposed
Cla05g01904 Cla-Chr5:30890743 Cla08g01453 Cla-Chr8:27429935 5.14E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61602 PF00847 AP2 2.60E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01453 - - cpep:111805867 263.077