Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01454 ATGGCCAACTTCAGCTTTCATTTTCTGACTGTCTTTCTTCTTCTTTTTCTTCTTCGCCCTCTTTCAGCTACTTCAAATGTTTCGGAGCTCTTTGAAATCTGGTGCACAGAGCATGGGAAATCGTATTCCTCCGCCGAAGAAAAGCTCTACAGGCTCAGTGTGTTTGCCGATAACTACGAATTTGTTACTCATCACAACAATTTGGGCAATTCTTCTTATACCCTTTCTCTCAATTCTTATGCTGATCTTACCCACCATGAGTTTAAGGTCTCTCGCTTGGGTTTTCCCCCTGCTTTGCGGAACTTACGGCGGGTTCCGCCGCTACAACCCTCTCTTCCACGGGATGTTCCCGATTCTTTAGATTGGAGGAAGAAAGGGGCGGTGACTGCTGTTAAGGATCAAGGAAGCTGTGGTGCTTGTTGGGCTTTCTCAGCTACAGGAGCCATTGAAGGGATCAACCAGATTATGACAGGGTCTCTTATTAGTCTCTCTGAACAGGAATTAATTGATTGTGACAGATCTTACAATTCTGGCTGTGAAGGAGGATTGATGGATTATGCATACCAATTTGTGATAAAAAACCATGGGATTGATTCTGAGAATGATTATCCTTTTCAGGGTCATGATGGATCGTGTCGTAAGGACAAGGGTGCTCTGTTGGGACCCTTAGGGATAGGAAAAGATTCCTTGCCGACTTGCATTTTATGTCTATTGACTTTGCAGCTGAAGAGGAACGCTGTCACCATTGATGGCTATACTGATGTCCCTCCAAGTGATGAGGGAAAGTTACTGCAAGCAGTAGCAGCTCAACCTGTGAGTGTCGGATATGGCTCAGAAAATGGAGTTGATTATTGGATTGTGAAGAACTCGTGGGGTAAAAGTTGGGGAATGGATGGTTATATGCACATGCAGCGCAACAGCGGCAATTCTGAAGGCGTTTGTGGAATCAACATGCTTGCTTCATATCCAACTAAAACAAGTCCTAACCCTCCTCCCTCCCCTCCTCCAGGTCCAACAAAATGTAGTATTTTTACTAGCTGTGGTGCTGGGGAGACCTGTTGTTGCGCAAAGAAATTCCTTGGCCTTTGTTTATCTTGGAAATGCTGTGGATTGAGCTCTGCTGTATGTTGCAAGGACGGTCGTCATTGTTGCCCCTTCGATTATCCCATTTGTGATACTGACAGGAACCTATGCCTCAAGCAAACGAGGAATGGTACAAGAACAGAAGCACTTGAGAATGGGAGTTCTTCCGGAACATCTGAACTTTCATGGATTAGCTTTGGAGGCTTCTTACCTCGGTCGAAGCCGGAGTTTTATCAGGTTTTGGCTCATCAGTTTCTTCAGGTTTCTGATCAGATTGCTACCTTTCAGGAACTTGTGGTTGCTGCTTAA 1392 45.04 MANFSFHFLTVFLLLFLLRPLSATSNVSELFEIWCTEHGKSYSSAEEKLYRLSVFADNYEFVTHHNNLGNSSYTLSLNSYADLTHHEFKVSRLGFPPALRNLRRVPPLQPSLPRDVPDSLDWRKKGAVTAVKDQGSCGACWAFSATGAIEGINQIMTGSLISLSEQELIDCDRSYNSGCEGGLMDYAYQFVIKNHGIDSENDYPFQGHDGSCRKDKGALLGPLGIGKDSLPTCILCLLTLQLKRNAVTIDGYTDVPPSDEGKLLQAVAAQPVSVGYGSENGVDYWIVKNSWGKSWGMDGYMHMQRNSGNSEGVCGINMLASYPTKTSPNPPPSPPPGPTKCSIFTSCGAGETCCCAKKFLGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDTDRNLCLKQTRNGTRTEALENGSSSGTSELSWISFGGFLPRSKPEFYQVLAHQFLQVSDQIATFQELVVAA 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27436366 27440766 + ClCG08G014660.2 Cla08g01454 279109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01454 463 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 134 145 IPR000169 -
Cla08g01454 463 SMART pept_c1 116 324 IPR000668 GO:0006508|GO:0008234
Cla08g01454 463 Gene3D Granulin 339 409 IPR037277 -
Cla08g01454 463 Gene3D Cysteine proteinases. Chain C 282 324 - -
Cla08g01454 463 PANTHER OS05G0508300 PROTEIN 16 275 - -
Cla08g01454 463 SMART GRAN_2 341 398 IPR000118 -
Cla08g01454 463 PANTHER OS05G0508300 PROTEIN 274 359 - -
Cla08g01454 463 PRINTS Papain cysteine protease (C1) family signature 134 149 IPR000668 GO:0006508|GO:0008234
Cla08g01454 463 PRINTS Papain cysteine protease (C1) family signature 269 279 IPR000668 GO:0006508|GO:0008234
Cla08g01454 463 PRINTS Papain cysteine protease (C1) family signature 284 290 IPR000668 GO:0006508|GO:0008234
Cla08g01454 463 SMART Inhibitor_I29_2 31 88 IPR013201 -
Cla08g01454 463 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 284 303 IPR025661 -
Cla08g01454 463 Gene3D Cysteine proteinases 22 276 - -
Cla08g01454 463 CDD Peptidase_C1A 117 323 IPR039417 -
Cla08g01454 463 Pfam Granulin 352 399 IPR000118 -
Cla08g01454 463 SUPERFAMILY Granulin repeat 338 371 - -
Cla08g01454 463 SUPERFAMILY Cysteine proteinases 27 324 IPR038765 -
Cla08g01454 463 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 16 275 - -
Cla08g01454 463 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 274 359 - -
Cla08g01454 463 Pfam Papain family cysteine protease 116 274 IPR000668 GO:0006508|GO:0008234
Cla08g01454 463 Pfam Cathepsin propeptide inhibitor domain (I29) 31 88 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01454 - - - csv:101211052 693.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01454 Cla-Chr8:27436366 Cla11g01846 Cla-Chr11:32039763 1.86E-92 dispersed
Cla08g01454 Cla-Chr8:27436366 Cla02g00624 Cla-Chr2:6955198 1.93E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30