Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01455 ATGGCTGAAGAAGGGCAAGTGATTGGAGTTCACAAGGTTGAGGAATTTGAGGCGCTTGTCAAGCGAGGAAACGACGCGGGTAAACTGAACAAGTCGTTGAACTCGATGATTGTGGTGGATTTTACTGCTTCCTGGTGTCCGCCATGCCGTTTCATTGCTCCAGTATTCGCAGAGTTGGCTAAGGCGCACGCCCATGTCATTTTCCTGAAAGTAGACGTCGATGAACTTAAAGAAATTGCCGAGAAGTTCGATGTTAATGCAATGCCGACCTTTGCTTTCGTGAAAGGAGGGGTGGAAGTTCACAGGATTGTCGGTGCTGACAAAGTGGAGCTGGGGAAGAAAGTATTGGAATTGAGCGCTTCAGCGGCTGCAACTTCTGCTGCATAG 387 48.84 MAEEGQVIGVHKVEEFEALVKRGNDAGKLNKSLNSMIVVDFTASWCPPCRFIAPVFAELAKAHAHVIFLKVDVDELKEIAEKFDVNAMPTFAFVKGGVEVHRIVGADKVELGKKVLELSASAAATSAA 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27447256 27448706 + ClCG08G014670.2 Cla08g01455 279110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01455 128 CDD TRX_family 14 110 - -
Cla08g01455 128 Gene3D Glutaredoxin 1 126 - -
Cla08g01455 128 Pfam Thioredoxin 33 110 IPR013766 -
Cla08g01455 128 PRINTS Thioredoxin family signature 45 54 - -
Cla08g01455 128 PRINTS Thioredoxin family signature 37 45 - -
Cla08g01455 128 PRINTS Thioredoxin family signature 84 95 - -
Cla08g01455 128 ProSiteProfiles Thioredoxin domain profile. 1 121 IPR013766 -
Cla08g01455 128 SUPERFAMILY Thioredoxin-like 6 110 IPR036249 -
Cla08g01455 128 PANTHER THIOREDOXIN 1 121 - -
Cla08g01455 128 ProSitePatterns Thioredoxin family active site. 38 56 IPR017937 -
Cla08g01455 128 PANTHER THIOREDOXIN 1 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01455 K03671 trxA; thioredoxin 1 - csv:101211302 151.369
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g01907 Cla08g01455 CCT
Cla05g01907 Cla08g01455 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01455 Cla-Chr8:27447256 Cla11g00529 Cla-Chr11:6030705 6.13E-24 dispersed
Cla08g01455 Cla-Chr8:27447256 Cla08g01456 Cla-Chr8:27452030 3.84E-45 tandem
Cla05g00097 Cla-Chr5:918643 Cla08g01455 Cla-Chr8:27447256 1.69E-11 transposed
Cla01g01949 Cla-Chr1:34151580 Cla08g01455 Cla-Chr8:27447256 3.52E-30 wgd
Cla05g01907 Cla-Chr5:30917341 Cla08g01455 Cla-Chr8:27447256 8.34E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56