Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01457 ATGGAGAAACTGGCAATTCCTTGCCAAACAAACCCTCCAATTTCTGTCCCTGCTTCAATCATCAAAGCCAGACCCCTTAAATTCTCCTCAAAACCAACTAAAACTTCTATATTTTTCACCCAGAAACTTACTACAAAGTTCAATGACGACCATTTGAGTTACCTTTGCAGCAATGGGCTCCTCCGGGAAGCCATAACAGCCATTGATTCAATGTCTAAACGTGGGTCTAAGTTAAGCACCAACACCTATATCAACTTGCTTCAAAGTTGCATAGATGCGGATTTTATTGAACTGGGTCGTGAGCTTCATGTTCGTATGAGTTTAGTCGATCAGGTAAACCCATTTGTTGAGACAAAGCTAGTAAGCATGTATGCGAAATGTGGGTTTCTAGAAGATGCACGTAAGGTGTTTGATGGAATGCAGGAGAGAAATTTGTACACTTGGTCGGCAATGATAGGGGCATATTCAAGAGAGCAGAGATGGAAAGAAGTAGTTGAACTTTTCTTTTTGATGATGGGAGAGGGGTTACTGCCTGATGCTTTTCTTTTCCCAAAAATACTGCAGGCTTGTGGCAATTGCGAGGATCTTGAAACTGTGAAGTTAATACATTCTGTGGTTATTCGATGTGGGTTGAGTTGTTGTATGCGTGTGAGTAATTCCATTTTGACGGCATTTGTCAAATGTAGGAAATTGAGTCTAGCTAGGAAGTTCTTTGGGAACATGGACGAAAGAGATGGGGTTTCTTGGAATGCTATAATAGCTGGTTATTGCCAGAAGGGCAATGGTGATGAAGCTAGGAGATTGCTTGATGCGATGAGCGATCAAGGATTCAAACCAGGTTTGGTTACTTATAACATAATGATTGCTTGTTATAGTCAGTTGGGGAATTGTAATCTTGTAATAGAATTGAAGAAGAAGATGGAGAGTATGGGGATAGCGCCTGATGTCTATACTTGGACCTCAATGATTTCGGGTTTTGCTCAAAGCAGCAGAATTAGTCAGGCATTGGATTTCTTCAAAGATATGATTCTAGCTGGGGTTGAACCAAATGCTATAACTATTGTAAGTGCGACCTCAGCCTGTGCTTCCCTAAAATCACTGCAAAAAGGGCTGGAAATACATTGTTTTGCAATTAAAATGGGAATTGCGCGTGAAGTATTGGTTGGGAATTCACTTATTGATATGTATTCTAAATGTGAAAAATTGGAAGCTGCTCGCCATGTCTTTGACACAATTTTAGAAAAAGATATTTATACATGGAACTCAATGATTGGAGGATATTGTCAGGCTGGATATTGTGGAAAAGCATATGCTCTTTTTATGAGATTAAGGGAATCAAATGTAATGCCTAATGTTGTTACATGGAATGTGATGATATCAGGATGTATACAGAATGGAGATGAGGATCAAGCTATGAACCTCTTTCAAATTATGGAAAAAGATGGGGAGGTTAGGCGGAATACAGCATCCTGGAATTCTCTGATTGCTGGGTACCACCAGCTTGGTGAAAAGAACAAAGCTCTAGCAATATTTCGACAAATGCAGTCTCTTAATTTTAGTCCTAATTCAGTGACTATCTTGAGCATTTTACCAGTTTGTGCAAATGTAATGGCAGAGAGAAAAATAAAGGAAATCCATGGTTGTGTGTTGCGCAGAAACCTGGAATCTGAGCTTCCTGTTGCAAACTCACTTATAGACACTTATGCGAAGTCAGGGAACATTAAATATTCAAGAACCATCTTTGATGGCATGTCATCCAAAGATATTATCACCTGGAATTCAATTATTGCAGGATATATATTACACGGCTGTTCAGATGCTGCATTTCATTTGTTTGGTCAGATGAAAAAGTTTGGAATTAGGCCAAACCGAGGTACTCTGGCTAGTATTATTCATGCCTATGGCATTGCTGGAATGGTAGATAAGGGAAGACATGTTTTTTCTAGCATCACTGAAGAACATCAAATTTTACCAACTTTAGATCATTATTTGGCTATGGTAGAACTTTATGGACGTTCTGGGAGGCTTACAGATGCAATGGAGTTCATTGAAGATATGCCTATAGAACCTGATGTCTCTATCTGGACCAGCTTACTTACTGCCTGTAGATTTCACGGGAACTTACACTTGGCAGTACAAGCAGCCGAGCGCCTACAGGAATTGGAGCCTGATAATCATGTCATTTACCGTTTATTAATACAGGCATATGCTTTATATGGAAAATTTGAACTAGCTCTAAAAGTGAGAAAGCTTGGAAAAGAGAGCACGATGAATAAATGTACAGCACAGTGCTGGGTTGAAGTCAGGAACAAAGTCCATTTATTTGTCTCTGGCGACCAGTCTAAACTTGACGTTCTGAATACTTGGATAAAAAGCATTGAAGGGAAAGTTGAAATGATCCTTGATATTGTATCACCTTGGTATTTTGATGAAGTTATGGAGAAAGCTCGGTTGAACAAGTCTTTCATGATTTGCGTTATTCTCATGTTTCCATCTCGATTTTTGTTTGGCTTTGTCTGCGTTGCACACTACAATTGTGCACGGGCATTGAAGTTCAAGAAAATTGTCGCTCTTCTCACTTTTCTAGTCTTTTGTTTCTGTAACAAGAATGGTGGAAATAATTGGGATGATGGAGTGTATTCGACTATCAGGCAGTTGGTAATTTGCCATGGAGCTGGTATCGATTCCATTAAGATTCAATATGATGTGAAGGGAAGTTCAATTTGGTCAGATAGACATGGAGGAAATGGTGGCACTAAAACAGACACGGTGAAGCTTGATTATCCGGATGAGTACTTGACTATGATCCGTGGACACTATGGTAGCTTTGTGTCATTTGACAAAGTTTTTGTTCGATCTCTGACTTTTATGAGCAACAAAAAGAAGTATGGACCTTATGGGGTCGAACAAGGAACAGTTTTCTCTTTCCCAAGTACTGAGGGCAAGATTGTAGGGTTCCATGGCAGGAGTGGATTGTACCTGGATGCCATTGGAGTTTACCTAAAGCCTATGGCAATACAAACGCCATCTAAAGCAATGATTCAGTCACAGAATTATGTTGCTAGTAAGACTGAAAGTGAAGGCTATTCAATTATACAAGGAAGTGTTGGCCAAAATTATGATATTGTTCTTGCTTTGAGGCAGAAGGATGAATTCAAAAAGCCTCTTCCAACTACTATCTCAAAACAAGTATCTAGTTCCTCAAGCTCAGAATCAAGTGATGATGAATCCACAGTCAAGAAGCCTGTTAAGAAGGGACCGTCTAAAGTTGAAAATGTCATACCATGTGGACCCTGGGGTGGCTCGGGCGGAACTCCATTTGATGACGGATATTACACTGGTATTAGACAAATTAATGTGTCGCGCAATGTTGGGATTGTATATATAAGAGTTCTGTATGCTTGTGATGAGGAATCTATATGGGGAGTACGAGCAGGTGGAACAGGAGGATTCAAACATGACAAGGTTATCTTGGACCATCCATATGAAATCTTGACTCATGTAACTGGACACTATGGGCCTGTTATGTACATGGGACCTAATGTTATCAAGTCACTCACATTCCATACCACGAAAACGAAGTACGGACCGTTCGGAGAGGCACAAGGAATCCCCTTTAGTACCAACGTCAAGGAGGGGAAGATTGTTGGATTTCATGGGAGGAAAGGTTTGTTCCTAGATGCTCTTGGTGTGCACTTAGTTGAAGGAAAGGTGACCCCAGCGTCTCGTCCTCCCTCCAGTGATATTGTTCCTGCTGCACCGTCACTTCTCGAAAATGAGAACGTTCCTTGGACCATGAAACTGGCACCTTCAAAAGGAGGAGCACTTGAAGAGATATACTTGACACGGTCTCTTGAAGCTTTTTGTTCAATTCAAATTGAATATGATCGAAACAAACAATCAGTTTGGTCAGTTAAGCATGGAGGAAACAGTGGAACAACCATACATCGGGTGAAATTGGATTATCCACATGAAGTGTTAACTTGTATATCAGGATATTACGGTTACATCGGTAAAGATGAGAGACAACAAGCTATAAAGTCGCTCACTTTTCACACAAGCAGGGGGAAGCTCGGTCCATTTGGGGAGGAGGTAGGTTCGTTTTTCACGTCCACAACGACGGAGGGCAAAGTGGTTGGGTTCCATGGGAGGAGCAGCTTGTATTTGGACGCCATTGGAGTTCACATGCAACACTGGCTAGGAAGCCAAAGGGCATCCAAGCCGTCTATGTTCAAACTGTTCTGA 4245 40.82 MEKLAIPCQTNPPISVPASIIKARPLKFSSKPTKTSIFFTQKLTTKFNDDHLSYLCSNGLLREAITAIDSMSKRGSKLSTNTYINLLQSCIDADFIELGRELHVRMSLVDQVNPFVETKLVSMYAKCGFLEDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGEGLLPDAFLFPKILQACGNCEDLETVKLIHSVVIRCGLSCCMRVSNSILTAFVKCRKLSLARKFFGNMDERDGVSWNAIIAGYCQKGNGDEARRLLDAMSDQGFKPGLVTYNIMIACYSQLGNCNLVIELKKKMESMGIAPDVYTWTSMISGFAQSSRISQALDFFKDMILAGVEPNAITIVSATSACASLKSLQKGLEIHCFAIKMGIAREVLVGNSLIDMYSKCEKLEAARHVFDTILEKDIYTWNSMIGGYCQAGYCGKAYALFMRLRESNVMPNVVTWNVMISGCIQNGDEDQAMNLFQIMEKDGEVRRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPVCANVMAERKIKEIHGCVLRRNLESELPVANSLIDTYAKSGNIKYSRTIFDGMSSKDIITWNSIIAGYILHGCSDAAFHLFGQMKKFGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVELYGRSGRLTDAMEFIEDMPIEPDVSIWTSLLTACRFHGNLHLAVQAAERLQELEPDNHVIYRLLIQAYALYGKFELALKVRKLGKESTMNKCTAQCWVEVRNKVHLFVSGDQSKLDVLNTWIKSIEGKVEMILDIVSPWYFDEVMEKARLNKSFMICVILMFPSRFLFGFVCVAHYNCARALKFKKIVALLTFLVFCFCNKNGGNNWDDGVYSTIRQLVICHGAGIDSIKIQYDVKGSSIWSDRHGGNGGTKTDTVKLDYPDEYLTMIRGHYGSFVSFDKVFVRSLTFMSNKKKYGPYGVEQGTVFSFPSTEGKIVGFHGRSGLYLDAIGVYLKPMAIQTPSKAMIQSQNYVASKTESEGYSIIQGSVGQNYDIVLALRQKDEFKKPLPTTISKQVSSSSSSESSDDESTVKKPVKKGPSKVENVIPCGPWGGSGGTPFDDGYYTGIRQINVSRNVGIVYIRVLYACDEESIWGVRAGGTGGFKHDKVILDHPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKTKYGPFGEAQGIPFSTNVKEGKIVGFHGRKGLFLDALGVHLVEGKVTPASRPPSSDIVPAAPSLLENENVPWTMKLAPSKGGALEEIYLTRSLEAFCSIQIEYDRNKQSVWSVKHGGNSGTTIHRVKLDYPHEVLTCISGYYGYIGKDERQQAIKSLTFHTSRGKLGPFGEEVGSFFTSTTTEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRASKPSMFKLF 1414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27456476 27463411 + ClCG08G014690.2 Cla08g01457 279112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01457 1414 MobiDBLite consensus disorder prediction 1057 1095 - -
Cla08g01457 1414 SUPERFAMILY Mannose-binding lectins 1276 1396 IPR036404 -
Cla08g01457 1414 Gene3D Tetratricopeptide repeat domain 476 545 IPR011990 GO:0005515
Cla08g01457 1414 Gene3D - 865 1005 IPR036404 -
Cla08g01457 1414 Pfam PPR repeat family 587 634 IPR002885 -
Cla08g01457 1414 Pfam PPR repeat family 415 462 IPR002885 -
Cla08g01457 1414 Pfam PPR repeat family 314 355 IPR002885 -
Cla08g01457 1414 Pfam PPR repeat family 246 290 IPR002885 -
Cla08g01457 1414 Pfam PPR repeat family 487 532 IPR002885 -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 418 452 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 453 483 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 119 145 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Cla08g01457 1414 TIGRFAM PPR: pentatricopeptide repeat domain 490 522 IPR002885 -
Cla08g01457 1414 Gene3D Tetratricopeptide repeat domain 202 359 IPR011990 GO:0005515
Cla08g01457 1414 SUPERFAMILY TPR-like 464 748 IPR011990 GO:0005515
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Cla08g01457 1414 SUPERFAMILY Mannose-binding lectins 869 1003 IPR036404 -
Cla08g01457 1414 CDD Jacalin 872 1002 IPR033734 GO:0030246
Cla08g01457 1414 Pfam PPR repeat 120 144 IPR002885 -
Cla08g01457 1414 Pfam PPR repeat 146 176 IPR002885 -
Cla08g01457 1414 Pfam PPR repeat 663 686 IPR002885 -
Cla08g01457 1414 PANTHER BNAA06G13890D PROTEIN 49 381 - -
Cla08g01457 1414 PANTHER BNAA06G13890D PROTEIN 520 791 - -
Cla08g01457 1414 PANTHER BNAA06G13890D PROTEIN 383 451 - -
Cla08g01457 1414 ProSiteProfiles Jacalin-type lectin domain profile. 1250 1398 IPR001229 -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Cla08g01457 1414 SMART Jacalin_2 1104 1235 IPR001229 -
Cla08g01457 1414 SMART Jacalin_2 1273 1398 IPR001229 -
Cla08g01457 1414 SMART Jacalin_2 872 1003 IPR001229 -
Cla08g01457 1414 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 381 - -
Cla08g01457 1414 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 520 791 - -
Cla08g01457 1414 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 383 451 - -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Cla08g01457 1414 ProSiteProfiles Jacalin-type lectin domain profile. 1093 1235 IPR001229 -
Cla08g01457 1414 Gene3D Tetratricopeptide repeat domain 634 757 IPR011990 GO:0005515
Cla08g01457 1414 Gene3D Tetratricopeptide repeat domain 360 469 IPR011990 GO:0005515
Cla08g01457 1414 Gene3D Tetratricopeptide repeat domain 546 633 IPR011990 GO:0005515
Cla08g01457 1414 Gene3D Tetratricopeptide repeat domain 108 199 IPR011990 GO:0005515
Cla08g01457 1414 ProSiteProfiles Jacalin-type lectin domain profile. 860 1003 IPR001229 -
Cla08g01457 1414 CDD Jacalin 1104 1233 IPR033734 GO:0030246
Cla08g01457 1414 Pfam Jacalin-like lectin domain 1278 1397 IPR001229 -
Cla08g01457 1414 Pfam Jacalin-like lectin domain 1104 1233 IPR001229 -
Cla08g01457 1414 Pfam Jacalin-like lectin domain 872 1003 IPR001229 -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Cla08g01457 1414 Gene3D - 1258 1397 IPR036404 -
Cla08g01457 1414 Gene3D - 1082 1234 IPR036404 -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 143 IPR002885 -
Cla08g01457 1414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Cla08g01457 1414 MobiDBLite consensus disorder prediction 1058 1073 - -
Cla08g01457 1414 CDD Jacalin 1276 1397 IPR033734 GO:0030246
Cla08g01457 1414 SUPERFAMILY Mannose-binding lectins 1095 1233 IPR036404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01457 - - - lang:109359636 1563.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01929 Cla-Chr5:31137657 Cla08g01457 Cla-Chr8:27456476 1.56E-11 dispersed
Cla05g01930 Cla-Chr5:31158127 Cla08g01457 Cla-Chr8:27456476 4.74E-16 dispersed
Cla05g01932 Cla-Chr5:31186131 Cla08g01457 Cla-Chr8:27456476 2.17E-07 dispersed
Cla05g01934 Cla-Chr5:31193217 Cla08g01457 Cla-Chr8:27456476 1.30E-07 dispersed
Cla08g01083 Cla-Chr8:23584162 Cla08g01457 Cla-Chr8:27456476 3.63E-17 dispersed
Cla08g01457 Cla-Chr8:27456476 Cla05g00927 Cla-Chr5:9154698 8.76E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53