Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01460 ATGGCCGATGGAGAAGAAGCCGCACGGCGTCACACGGCGGTGAATGACTACCGCAAGAAACTCCTTCAGCACAAAGAACTCGACGCTAGAGTCCGATCTCTGAGGGAGAACTTACGAGGTGCAAAGAAAGAATTTAACAAGACGGAAGATGATTTGAAGTCCCTGCAAAGTGTTGGCCAGATTATTGGAGAAGTTCTCAGGCCACTTGACAATGAACGCTTGATTGTCAAAGCAAGCAGTGGACCAAGATATGTTGTTGGATGCCGTAATAAGGTGGATAAGGATAAATTGACGTCTGGTACTCGAGTGGTACTTGATATGACGACACTTACCATTATGAGGGCTCTTCCACGTGAAGTAGATCCAGTTGTGTATAATATGTTGCATGAAGATCCTGGTAATGTTAGCTATTCTGCTGTGGGTGGTTTGTCTGATCAAATTAGAGAATTGAGGGAGTCTATCGAGCTACCTCTCATGAATCCTGAGCTTTTCCTTAGGGTTGGCATCAAACCCCCCAAGGGTGTGCTCCTATACGGTCCTCCTGGTACCGGCAAGACGTTGCTGGCAAGAGCAATTGCGAGTAACATAGATGCTAACTTCTTAAAGGTTGTATCGAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCAAGGTTAATACGTGAGATGTTTGGGTATGCACGTGATCACCAGCCCTGCATAATTTTTATGGATGAGATTGATGCCATTGGTGGGCGGAGATTCAGTGAGGGAACAAGTGCAGATCGTGAAATTCAGCGAACATTGATGGAGTTACTTAATCAGCTTGATGGTTTTGATCAGCTTGGCAAGGTCAAAATGATAATGGCCACAAATAGGCCCGATGTTCTTGACCCTGCACTTCTTCGGCCAGGGCGATTGGATCGCAAAATAGAGATTCCCCTGCCAAATGAACAATCCAGAATGGAGATCCTTAAGATTCATGCGGCTGGAATTGCCAAGCATGGTGAGATTGATTATGAAGCTGTTGTGAAGCTTGCAGAGGGCTTCAATGGAGCTGATTTGCGAAATGTGTGCACCGAAGCTGGAATGTCAGCTATCCGTGCCGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGGAAACAATTTCCGCAGAAAGAGAGAGCATCTAAAGCTTCTTGCTTCCCAAGCTTTCTCTGATAAATCCACCGGCACTTCCATCTCCGACCACAACTTCGACCACCAAGAATGGCTGACGGTGAAGAAGCCGCCCGACGTCACACGGCGGTCAATGATTACCGCAAGAAACTCCTTCAGCACAAAGATGAGGGAGAATTTGCGAGCTGCAAAGAAGGAATTTAACAAGACGGAAGATGATTTGAAGTCTCTGCAAAGTGTTGGCCAGATTATTGGAGAAGTTCTCAGGCCACTTGACAATGAACGCTTGATCGTCAAAGCAAGCAGTGGACCGAGGTATGTGGTTGGATGCCGCAATAAAGTCGATAAGGAAAAACTAACATCTGGTACTAGAGTAGTTCTTGATATGACAACACTCACCATTATGAGGGCTCTTCCACGTGAAGTAGATCCTGTTGTGTATAATATGTTGCACGAAGATCCTGGTAATGTTAGCTATTCTGCCGTGGGTGGCTTATCTGATCAAATTAGAGAACTGAGGGAGTCCATTGAGTTACCTCTCATGAATCCTGAGCTTTTCCTTAGGGTTGGAATCAAACCTCCCAAGGGTGTGCTTCTGTATGGCCCTCCTGGTACTGGGAAGACATTGTTAGCAAGGGCAATTGCAAGCAACATAGATGCCAACTTCTTAAAGGTTGTATCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAGCCCTGCATAATTTTTATGGATGAGATTGATGCCATCGGTGGGAGGAGATTCAGTGAGGGAACAAGTGCTGATCGCGAAATTCAGCGAACATTGATGGAGTTGCTTAATCAGCTTGATGGTTTTGATCAGCTCGGTAAGGTCAAAATGATAATGGCTACAAACAGGCCAGATGTTCTGGACCCTGCACTTCTTCGTCCAGGGCGATTGGACCGCAAAATTGAGATTCCCTTGCCGAATGAGCAATCCAGAACAGAGATCCTTAAGATTCATGCCGCTGGAATTGCCAAGCATGGTGAGATCGACTATGAAGCTGTTGTAAAGCTTGCAGAGGGATTTAATGGAGCTGATTTGCGGAATGTCTGCACTGAAGCTGGAATGTCAGCTATTCGTGCAGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGCAGTACGAAAATTGAATGAAGCTAAGAAACTTGAATCCATTAGAAATACCTTAATAAGGAAAGGGACAGCAGAAGATAGAGTCATTTCGACATTGGAAATGGATGCATTGTGTTGGAATCATCCATCAATTTCTCTGAAAGGCAGCGAAATTTCTGAGAATCATGGTTTCTTTAGACCCAAATCGTCGTCGCATTTGCACTGCCGAGCGGCGATGAACAGTTCAAATCCAGAATCAAAGCCATCGCCACCGAAAATCCAGAATCGCATGTTTATTTTAGGGATGGGTTTCGTTGGACAGTTCTTTGCGCAAGAACTAAAGGCTGTTTCTGGGACTTGTAGAAACCTTGGGCAGAAGATGGAACTGGAGGGAAGGGGTTTTGATGTTTATGTGTTTGATGCAAATGATCCAGAACAGGGCACTCTAAAAGTAATGAAGTATCATACTCACCTTCTCATTTCTATTCCACCAGATGTGGATGTTGGTGATCCTTTGCTCCAGCATGAAAAACTATTAAGGACTACTTTACAGGGTGGAGATCTTCGATGGCTTTGCTATTTGTCATCAACAAGTGTTTATGGAGATTATGGTGGTGCTTGGGTAGATGAAGATAACCTGACGAACCCCTCAAGTCAGTCAGGCAAGTTGAGGATCGAAGCAGAGGAGAGATGGCTAAATTTGGGAAATGATCTTGGCCTCTCAACTCAAGTACTTCGGCTTGGAGGTATCTATGGTCCAGGTTGTGACCTCGTTTCTCTTGATATATTTGTGAGAAATCGGCCATCTTTCTGCGTTCCATTCTTCTTTGTCATTCACTGCATTCAACTTCAAATCTGTACCATTTCTATTCTATTGATTTTCATCAAGTTCCATGTCAGTGAACAGATGTTGTTGTTCTTGTTATACAAACATTGGTTTCATCACAGTGCTATTGATACAATAATCAAGCAGAGATCCTTATCTGAGCGTCAACATCGTAGAGCACGTAGACAATACACATCCCGAGTTCATGTTCAGGACATCTGCCAAGCTCTTAAAGCCTGTATTCAAAGGCCTTCATCCAGGAGAGTTTACAACATAGTTGATGACGATCCAGCTCCAAGGGAAGAAGTTTTCTCGTACGCTCGAGATTTGGTTGAGAAAAAGTGGCCCGGGAAATTCAACACACTGTCGAAGCAGGTGGAGGCAAGTGTTATTACCAATGGGAGTGGAAGGGGCGATAAAAGAGTGTGTAATGTACGTATGAAAAGGGAGCTGGGAGTGAGTCTTGTGTATCCCAGTTATAAATCAGGATTGCAAAGCATAATTGACCAAATGGGAGATGAGGAACCCTTTTGA 3669 44.21 MADGEEAARRHTAVNDYRKKLLQHKELDARVRSLRENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKDKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKGNNFRRKREHLKLLASQAFSDKSTGTSISDHNFDHQEWLTVKKPPDVTRRSMITARNSFSTKMRENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESIRNTLIRKGTAEDRVISTLEMDALCWNHPSISLKGSEISENHGFFRPKSSSHLHCRAAMNSSNPESKPSPPKIQNRMFILGMGFVGQFFAQELKAVSGTCRNLGQKMELEGRGFDVYVFDANDPEQGTLKVMKYHTHLLISIPPDVDVGDPLLQHEKLLRTTLQGGDLRWLCYLSSTSVYGDYGGAWVDEDNLTNPSSQSGKLRIEAEERWLNLGNDLGLSTQVLRLGGIYGPGCDLVSLDIFVRNRPSFCVPFFFVIHCIQLQICTISILLIFIKFHVSEQMLLFLLYKHWFHHSAIDTIIKQRSLSERQHRRARRQYTSRVHVQDICQALKACIQRPSSRRVYNIVDDDPAPREEVFSYARDLVEKKWPGKFNTLSKQVEASVITNGSGRGDKRVCNVRMKRELGVSLVYPSYKSGLQSIIDQMGDEEPF 1222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27494937 27513401 + ClCG08G014720.2 Cla08g01460 279115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01460 1222 Pfam ATPase family associated with various cellular activities (AAA) 578 711 IPR003959 GO:0005524|GO:0016887
Cla08g01460 1222 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Cla08g01460 1222 Pfam AAA+ lid domain 331 373 IPR041569 -
Cla08g01460 1222 Pfam AAA+ lid domain 734 776 IPR041569 -
Cla08g01460 1222 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 431 788 - -
Cla08g01460 1222 SMART AAA_5 171 310 IPR003593 -
Cla08g01460 1222 SMART AAA_5 574 713 IPR003593 -
Cla08g01460 1222 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 179 198 - -
Cla08g01460 1222 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 1004 1023 - -
Cla08g01460 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 788 IPR027417 -
Cla08g01460 1222 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 375 - -
Cla08g01460 1222 PANTHER - 431 788 - -
Cla08g01460 1222 PANTHER - 4 375 - -
Cla08g01460 1222 Gene3D - 531 711 IPR027417 -
Cla08g01460 1222 Gene3D - 128 308 IPR027417 -
Cla08g01460 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 374 IPR027417 -
Cla08g01460 1222 CDD AAA 544 711 - -
Cla08g01460 1222 Gene3D - 1085 1216 - -
Cla08g01460 1222 Gene3D - 862 1039 - -
Cla08g01460 1222 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 22 374 IPR005937 GO:0005737|GO:0030163|GO:0036402
Cla08g01460 1222 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 440 782 IPR005937 GO:0005737|GO:0030163|GO:0036402
Cla08g01460 1222 CDD AAA 141 308 - -
Cla08g01460 1222 CDD SDR_a4 867 1196 - -
Cla08g01460 1222 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Cla08g01460 1222 Gene3D - 431 530 IPR012340 -
Cla08g01460 1222 Gene3D - 23 127 IPR012340 -
Cla08g01460 1222 Gene3D - 712 782 - -
Cla08g01460 1222 Gene3D - 309 377 - -
Cla08g01460 1222 Coils Coil 434 461 - -
Cla08g01460 1222 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 871 1216 IPR036291 -
Cla08g01460 1222 Pfam Proteasomal ATPase OB C-terminal domain 465 520 IPR032501 -
Cla08g01460 1222 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Cla08g01460 1222 ProSitePatterns AAA-protein family signature. 681 699 IPR003960 GO:0005524|GO:0016887
Cla08g01460 1222 Coils Coil 24 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01460 K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4 - csv:101212754 736.873
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01460 Cla-Chr8:27494937 Cla11g00253 Cla-Chr11:2948940 5.15E-100 dispersed
Cla11g00644 Cla-Chr11:7371515 Cla08g01460 Cla-Chr8:27494937 1.58E-06 dispersed
Cla08g01460 Cla-Chr8:27494937 Cla06g01067 Cla-Chr6:23155869 6.28E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1001 . . . . . . . . Cmo05g00271 . . . . . . . . Bhi04g00204 . . . . . . Cla08g01460 Cam08g1946 . Cco08g1659 Clacu08g1636 . Cre08g1422 . . Cone17ag1362 Cone20ag0119 . . . Cme03g01925 . Blo18g00799 Bda08g01258 Bda01g01512 Bpe02g01708 . Bma01g00746 . . . . . Cma05g00268 Car05g00222 . Cpe11g00221 . . . . . . . . . . . . . . . Lsi08g01368 Csa02g02085 Chy03g01429 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002198 2 2 2 2 2 1 3 1 2 2 1 1 4 2 2 4 1 1 4 1 2 2 2 2 0 2 3 0 4 2 59