Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01471 ATGGGAGCCGAGCCTTTGCTTCAGACTGCTAATGATTCTGAAGCCGCCCCTCTTATTCTTGGACTTCAACCTGCTGCCCTCATCGACCATGTTTCCCGTGTCGATTCCTCTCTTCTTGATCGAATTCCCGGCGACCGCGGTGGCTCAATGCCGGTAGGTATGGAAGAGCTTGAGAATATACTGAGGGAGGTGAAATCCTATATACTTTCCTCGCCTGATGATCTGGCTCCGGTCAAGACAATAGCTGGGGGAAGCGTTGCCAACACAATTCGAGGACTGAGTGCGGGGTTTGGAGTCAGTTGTGGAATTATTGGCGCCTATGGGGATGATGAGCAAGGAAAATTGTTTGTCTCTAACATGAGCTCCAATGGGGTCAATCTCTCAAGATTGAGGATGATTAAAGGTCCCACAGCTCAGTGTGTTTGCCTGGTTGATGCATTGGGCAATCGTACAATGCGACCCTCGCTCTCAAGTGCGGTTAAAGTTCAGGGCAGTGAACTAACTAGAGATGACTTTAAGGGCTCTAAGGTTAGCTGGCTTGTAATGAGATATAGTATATTTAACATGGAGATTATTGAAGCGGCTGTAAAGATGGCCAAACAAGAGAAAGTTTTTGTGTCCTTGGATTTGGCCAGTTTTGAGGTACATATTCCTAGACAAGTTCAGTTCTATCATTTGTGTGATGTGATTTTGGTTTTGGAGAAGAGCCTGTTATATCGTTTGAAAAGAAATGAAAACAAAGTAGCTCACGTCTCTATATTTGGCCAGATGGTTCGAGATTTTAGATTACCTCTACTCCAGCTACTAGAGTCTGGGGATGTCGACCTTTGCTTTGCCAATGAAGACGAAGCAAAAGAGTTGATAGGGGGTGAGAAAGATGCTGATCCTGAAGTTGCAGTAGAATTTCTTGCAAAGCACTGTCAATGGGCTGTTGTGACATTAGGCGCGAATGGTTGTATCGCTAAGCATGGAAAAGAGATAGTTCGAGTTCCAGCAATAGGGGAATCAAAGGCGACCGATGCCACTGGAGCAGGCGACTTGTTTGCGAGCGGATTTTTGTACGGATTAGTAAAGGGGTTGTCTCTGGAGAAGTGCTGTCAACTTGGATCGTGCAGCGGCGGTTCTGTCATCCGTGCCCTTGGGGGTGAGGTTACCCCAGAAAATTGGCAATGGATGCACAAGCATTTGCAAATCAAAGGGCTTCCTCTCCCTGAGATCCCTCAATGA 1227 46.62 MGAEPLLQTANDSEAAPLILGLQPAALIDHVSRVDSSLLDRIPGDRGGSMPVGMEELENILREVKSYILSSPDDLAPVKTIAGGSVANTIRGLSAGFGVSCGIIGAYGDDEQGKLFVSNMSSNGVNLSRLRMIKGPTAQCVCLVDALGNRTMRPSLSSAVKVQGSELTRDDFKGSKVSWLVMRYSIFNMEIIEAAVKMAKQEKVFVSLDLASFEVHIPRQVQFYHLCDVILVLEKSLLYRLKRNENKVAHVSIFGQMVRDFRLPLLQLLESGDVDLCFANEDEAKELIGGEKDADPEVAVEFLAKHCQWAVVTLGANGCIAKHGKEIVRVPAIGESKATDATGAGDLFASGFLYGLVKGLSLEKCCQLGSCSGGSVIRALGGEVTPENWQWMHKHLQIKGLPLPEIPQ 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27620889 27624298 - ClCG08G014870.2 Cla08g01471 279126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01471 408 Gene3D - 24 385 IPR029056 -
Cla08g01471 408 Pfam pfkB family carbohydrate kinase 78 166 IPR011611 -
Cla08g01471 408 Pfam pfkB family carbohydrate kinase 243 381 IPR011611 -
Cla08g01471 408 PANTHER CARBOHYDRATE KINASE-LIKE 256 399 - -
Cla08g01471 408 PANTHER CARBOHYDRATE KINASE-LIKE 1 218 - -
Cla08g01471 408 SUPERFAMILY Ribokinase-like 26 382 IPR029056 -
Cla08g01471 408 CDD adenosine_kinase 17 381 - -
Cla08g01471 408 PANTHER SUGAR KINASE 256 399 - -
Cla08g01471 408 PANTHER SUGAR KINASE 1 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01471 - - - csv:101214597 667.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00986 Cla-Chr7:26059501 Cla08g01471 Cla-Chr8:27620889 2.16E-09 dispersed
Cla08g01471 Cla-Chr8:27620889 Cla09g01265 Cla-Chr9:18145878 5.62E-10 dispersed
Cla08g01471 Cla-Chr8:27620889 Cla08g00773 Cla-Chr8:20124872 4.78E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g967 . . . . . . . . Cmo05g00262 Cmo12g00406 . . . Car12g00431 . . Cpe07g00408 Bhi04g00190 . . . Hepe10g0623 . . Cla08g01471 Cam08g1959 Cec08g1534 Cco08g1672 Clacu08g1649 . Cre08g1434 Cone4ag1920 Cone7ag1832 . . . . . Cme03g01937 Blo17g00786 . Bda08g01276 . . Bpe05g00101 . Bma05g00129 . . . Cma12g00456 Cma05g00257 Car05g00214 . Cpe11g00212 . . . . . . . . . . . . . . . Lsi08g01381 Csa02g02070 Chy03g01442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006701 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 3 38